PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g016770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 207aa    MW: 23469.9 Da    PI: 9.158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g016770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.22e-33151401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d+++++P ++p   +++ek+ yfF+k+++ ++t++r +    +gyWk  gk++++++ 
  Csa13g016770.1  15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFYSHPLTFPG--DQKEKQRYFFCKKKEVSSTEHRIKILSGDGYWKPIGKERPIIA- 105
                     699*************************99.88***************4..4578899************************************. PP

             NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      g++vg+++tL+fy  ++++++ +k +W+m ey l
  Csa13g016770.1 106 CGRTVGIRRTLAFYetNKSSSNCNKNRWCMTEYCL 140
                     999***********4434666778*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4010159IPR003441NAC domain
PROSITE profilePS5100536.39515160IPR003441NAC domain
PfamPF023651.8E-1916140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEVEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFYSHPLTF  60
PGDQKEKQRY FFCKKKEVSS TEHRIKILSG DGYWKPIGKE RPIIACGRTV GIRRTLAFYE  120
TNKSSSNCNK NRWCMTEYCL AGFASAKVFG EWAVYNVYER KGSKARKQRK SRDIGDEDLS  180
CSINITVESD HETGPPPLSP PTSADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-201314013140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g016770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453506.11e-154PREDICTED: NAC domain-containing protein 83-like
TrEMBLD7M5Z01e-129D7M5Z0_ARALL; ANAC084
STRINGXP_010453506.11e-153(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-130NAC domain containing protein 84