PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017160.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 264aa    MW: 30195.9 Da    PI: 5.9571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017160.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-111461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R +k+c++rw +yl
   Csa13g017160.2 14 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRWGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.91.7e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T  E++++ +++ qlG++ W++Ia+++  gRt++++k++w++
   Csa13g017160.2  67 RGGFTDAEEDRIMELHSQLGNR-WSKIASHFS-GRTDNEIKNHWNT 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-19564IPR009057Homeodomain-like
PROSITE profilePS5129412.433961IPR017930Myb domain
SuperFamilySSF466891.24E-2611108IPR009057Homeodomain-like
SMARTSM007170.00161363IPR001005SANT/Myb domain
PfamPF002491.6E-91461IPR001005SANT/Myb domain
PROSITE profilePS5129425.12762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2565117IPR009057Homeodomain-like
SMARTSM007175.6E-1466114IPR001005SANT/Myb domain
PfamPF002494.4E-1467110IPR001005SANT/Myb domain
CDDcd001673.34E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRIV PKLAGLLRWG KSCRLRWINY  60
LRPDLKRGGF TDAEEDRIME LHSQLGNRWS KIASHFSGRT DNEIKNHWNT KIKKKMKHLG  120
LDPATHKPID NTTHHTDPNQ DTKPKMCSST NEGEEINDQT PKDDVITETT KALILSGSDE  180
ELLAKNCKTL GVEEIDLESL FEPQGNEITS SSLSSLYSNI SRSESSSHFA EDSISLDQWD  240
LDMTDPFVPW DHFANFDDNL FFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017160.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196220.0AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453553.10.0PREDICTED: myb-related protein 315
TrEMBLF4K6R61e-158F4K6R6_ARATH; Myb domain protein 40
STRINGXP_010453553.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-160myb domain protein 40