PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 320aa    MW: 34591.7 Da    PI: 5.3216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601118.6e-35351351101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+Ca+dC+++ yfpa+++++f+n+h+l+G snv ++l+++ +e r d ++s++y A+ + r P +G+ ++i+ lq+q++ l aela
  Csa13g017890.1  35 ACAACKHQRRRCAPDCIFRAYFPADRHQDFRNIHRLYGLSNVKHMLARMTPELRGDGIKSIIYGANLWSRFPGQGCSQLIRLLQNQIALLTAELA 129
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  Csa13g017890.1 130 RTRTQI 135
                     999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.70434135IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-3335132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTPNKLVWFL ITTSVIILMT SQGSSGVKQV DKSGACAACK HQRRRCAPDC IFRAYFPADR  60
HQDFRNIHRL YGLSNVKHML ARMTPELRGD GIKSIIYGAN LWSRFPGQGC SQLIRLLQNQ  120
IALLTAELAR TRTQITASAA ASNPAAAAVS NTSDAFFYPP AAKFFYPPTA NFFDPAAFNF  180
FTPTTAVESE LINPFPNIVA NNERTLPPET SATANNNDVQ QSIPNLNINL GTSTVPADDF  240
DFVAGLEASG GAPPNDVQQS IHNPNNLGSS PGPLDDFDFV AGLEASGGAP PNDDPLREFY  300
FGFTDAERSF FGFQDSGDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-203613512111LOB family transfactor Ramosa2.1
5ly0_B2e-203613512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873706.16e-86LOB domain-containing protein 6
TrEMBLD7M6R01e-84D7M6R0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60012372e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15060.14e-29LBD family protein