PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017960.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 547aa    MW: 58866.1 Da    PI: 7.2102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017960.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30225284159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  Csa13g017960.2 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 284
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-31210286IPR003657WRKY domain
SuperFamilySSF1182901.57E-27218286IPR003657WRKY domain
PROSITE profilePS5081128.69220286IPR003657WRKY domain
SMARTSM007749.3E-37225285IPR003657WRKY domain
PfamPF031064.6E-27226284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEVLLKLPAS DSPLKDKVFG SVKGVGDHQE LESAKAEMSE VKEENEKLKG MLERIESDYK  60
TLKLRFFDII QQEPSDNPAQ NQNHPKPTTT DLSSFDQERE LVSLSLGRRS SSPSDSIPKK  120
EEKDAKSAEF NADKELTKAG LTLGINNIDG RESNVSLSME NTANSSLENS TEEAPGETWP  180
PSKVTGKRSS PAPASGGDVE GETGQQNHVK RARVCIRARC DTPTMNDGCQ WRKYGQKIAK  240
GNPCPRAYYR CTVAPGCPVR KQVQRCADDM SILITTYEGT HSHPLPLSAT TMASTTSAAA  300
SMLLSGSSSS PAAEMIGNNL YDNSRFNNCS NKSFYSPTLH SPLHPTVTLD LTAPQHPSSS  360
SLPSLNFNKF SNSFQRFPST SLNFSSNASS SSTSSNLNLP AIWGNGYSSY TPYPYNNVQF  420
GPSNLGKTVQ NSQSLTETLT KALTSDPSFH SVIAAAISTM VGSNGEQQIA GPRNSIGNNI  480
QQTTTTNNNK GCGGYFSSLL MSNIMASNQT GASLDQPSSQ LPPFSMFKNS SSSSSTTSFV  540
NKEEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21212286174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017960.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453641.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLD7M6R70.0D7M6R7_ARALL; WRKY DNA-binding protein 72
STRINGXP_010453641.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72