PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g018640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 185aa MW: 21386.4 Da PI: 6.0838

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g018640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.2	2.1e-14	74	128	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ ++ + + Csa13g018640.1 74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLEKLNKVSDSNDHV 128 689*******************************************999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-12	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	72	135	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-11	73	127	No hit	No description
Pfam	PF00170	3.1E-12	74	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-12	74	124	No hit	No description
CDD	cd14702	1.19E-18	75	122	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MQPNYDSLSL TNMQQQDYFH LNNYYNDLTP ASTNNNLNLL QYPQIQELNL QSPASNNSTT 60 SDDATEGIFV INERKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NHQLLEKLNK 120 VSDSNDHVIQ ENLNLKEENS ELRQVITSMK KLGGDTHEKY SSSSMDEDLI SSTTDDPRTH 180 HHPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00512	DAP	Transfer from AT5G15830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g018640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117828	1e-175	AK117828.1 Arabidopsis thaliana At5g15830 mRNA for putative bZIP transcription factor AtbZip3, complete cds, clone: RAFL18-02-O03.
GenBank	AL391144	1e-175	AL391144.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project).
GenBank	BT003683	1e-175	BT003683.1 Arabidopsis thaliana At5g15830 mRNA, complete cds.
GenBank	CP002688	1e-175	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453732.1	1e-132	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	1e-33	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	R0GXL9	1e-110	R0GXL9_9BRAS; Uncharacterized protein
STRING	XP_010453732.1	1e-132	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	3e-81	basic leucine-zipper 3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]