PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g019350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 401aa MW: 45249.6 Da PI: 9.188

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g019350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.2e-32	235	288	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Csa13g019350.1 235 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 288 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.33E-15	232	288	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	233	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-24	235	288	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-7	236	287	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MSMEGVFLEK PKSNTTTTTS TLPDLSLHIS LPDIHHHHHQ YHHNDTSKEP NRRSSQPENN 60 RSSNFELSFS HHNHPTARIF HCPDRRNLNL PHHQQHYNNP IINGGSLHQR VDESEINNLH 120 RPIRGIPVYH NRSFPFHNQT SPSSSLPSLG GGGGDLDQIS ILNSSSGYNN ACRSLQSSPR 180 LKGVPLHHHH HHNHYGIVGS SDSSSPHHHN HHHHHGMIRS RFLPKMPTKR SMRAPRMRWT 240 SSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK TTNKPGASSD 300 GSGEEEMGIN GNEVHHQSST DQRAQSDDTS LHQEIDISST QPRWSNSSRT SSTSMTSHHQ 360 RSSLQNQEQR SNDQAKRCGD LSCNNPSLEF TLGRPDWHDK *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MSMEGVFLEK PKSNTTTTTS TLPDLSLHIS LPDIHHHHHQ YHHNDTSKEP NRRSSQPENN  60
RSSNFELSFS HHNHPTARIF HCPDRRNLNL PHHQQHYNNP IINGGSLHQR VDESEINNLH  120
RPIRGIPVYH NRSFPFHNQT SPSSSLPSLG GGGGDLDQIS ILNSSSGYNN ACRSLQSSPR  180
LKGVPLHHHH HHNHYGIVGS SDSSSPHHHN HHHHHGMIRS RFLPKMPTKR SMRAPRMRWT  240
SSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK TTNKPGASSD  300
GSGEEEMGIN GNEVHHQSST DQRAQSDDTS LHQEIDISST QPRWSNSSRT SSTSMTSHHQ  360
RSSLQNQEQR SNDQAKRCGD LSCNNPSLEF TLGRPDWHDK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	236	290	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	236	290	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	236	290	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	236	290	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	236	290	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g019350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY030192	0.0	AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds.
GenBank	AY048688	0.0	AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds.
GenBank	BT026436	0.0	BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019090691.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X1
Swissprot	Q93WJ9	0.0	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	R0H7C9	0.0	R0H7C9_9BRAS; Uncharacterized protein
STRING	XP_010420352.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6606	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]