PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g019630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 99aa    MW: 10903.2 Da    PI: 7.3514
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g019630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.41.1e-282891265
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65
                    Fl+k+y++++d+ ++e++sws+ +nsfvv++  ef+k +LpkyFkh+nf+SFvRQLn+YgF+ +
  Csa13g019630.1 28 FLSKTYDMVDDPLTNEVVSWSSGNNSFVVWNVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFSLS 91
                    9************************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-302390IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-252498IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-252690IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-182851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-232890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MESVRESAPS ANSNTPTIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWNVP  60
EFSKVLLPKY FKHNNFSSFV RQLNTYGFSL SPVSSNKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A9e-212588770Heat shock factor protein 2
5hdk_B9e-212588770Heat shock factor protein 2
5hdk_C9e-212588770Heat shock factor protein 2
5hdk_D9e-212588770Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g019630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373344e-95AC237334.1 Arabidopsis lyrata clone JGIFAFI-61P18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453856.12e-55PREDICTED: heat stress transcription factor A-1b
SwissprotO818216e-51HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A178UCE22e-48A0A178UCE2_ARATH; HSFA1B
STRINGXP_010453856.17e-55(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-40heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]