PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g020630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 261aa MW: 28778.9 Da PI: 6.7045

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g020630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47	4.4e-15	18	78	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Csa13g020630.1 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 78 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.5	1.7e-34	17	80	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Csa13g020630.1 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 80 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-14	12	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-8	13	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.224	14	79	IPR001356	Homeobox domain
SMART	SM00389	2.7E-5	16	83	IPR001356	Homeobox domain
Pfam	PF00046	8.8E-13	18	78	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDQEGASQST STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGAV 60 GDANVFYWFQ NRRSRSRRRQ RQLQAATAAP ATSGGDQHMT AMSMHQYPYS NSEIDLGFGS 120 CINSSANYFL NGTTSSSQVS SFLLGLSSSS GVCETNGMEN LFTMHGHESH HHHQHSSNAH 180 SMFSSSDENS NFQYQQGLMT VFINGVPTEV TKGTIDMKAT FGEDSVLLHS SGLPLPTDEF 240 GFLMHSLQHG QAYFLVPRQT *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g020630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251403	0.0	AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453983.1	0.0	PREDICTED: WUSCHEL-related homeobox 12-like
Swissprot	Q8GY25	1e-129	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	D7LXM9	1e-138	D7LXM9_ARALL; Predicted protein
STRING	XP_010453983.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-114	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]