PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g021200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 152aa    MW: 17795.1 Da    PI: 8.1775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g021200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.12.2e-16171333126
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     +Gf F+P++eel+ +yL  k+  ++   +++++  ++ + y  +Pw+L+++ k+   e +ew++F+kr++k +             Wk tg  k 
  Csa13g021200.1  17 VGFGFSPSEEELIRDYLLSKLGFDQdqrNKIFTLEDKENSYAEKPWQLNHT-KNdifEPNEWFYFVKRNRKVK------------GWKDTGGLKY 98 
                     7*******************98777333444333445589999*****842.22245778******9877642............3*****9887 PP

             NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmh.ey 126
                     v +    +g+++g k+ L fy +++p+     W+m  ey
  Csa13g021200.1  99 VNVVsrkTGRVIGKKRNLSFYVKSKPS----VWTMTtEY 133
                     76654457888**********666665....79985356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2015148IPR003441NAC domain
PROSITE profilePS5100516.515151IPR003441NAC domain
PfamPF023651.4E-1117133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAMVDECYAD DEEDELVGFG FSPSEEELIR DYLLSKLGFD QDQRNKIFTL EDKENSYAEK  60
PWQLNHTKND IFEPNEWFYF VKRNRKVKGW KDTGGLKYVN VVSRKTGRVI GKKRNLSFYV  120
KSKPSVWTMT TEYSSIDKSF RNQVLCHLKG P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g021200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454060.11e-110PREDICTED: NAC domain-containing protein 35
TrEMBLA0A178UJG95e-53A0A178UJG9_ARATH; NAC088
STRINGXP_010454060.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-56NAC domain containing protein 88