PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g021460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 191aa    MW: 19877.1 Da    PI: 7.2032
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g021460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.98e-142449227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++C++f+rtG Ck+G++C+F+H++
  Csa13g021460.1 24 EQPECQYFMRTGDCKFGSSCRFHHPM 49
                    5799********************95 PP
2zf-CCCH31.43.4e-107193426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    + C +fa+ G Ck+G+ CkF H+
  Csa13g021460.1 71 AQCTHFAEHGVCKFGPACKFDHS 93
                    67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-62249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7982250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-72350IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-112549IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-52849IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816795IPR000571Zinc finger, CCCH-type
SMARTSM003560.00136794IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-67095IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-87193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-47394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
PAYQSGPSST GISNKEQTFP QRPEQPECQY FMRTGDCKFG SSCRFHHPME AASPKDITLS  60
HIGLPLRPGA AQCTHFAEHG VCKFGPACKF DHSIGSSSLS YNPSASLLTD MPVVPHPLGS  120
SSLGTLAPTS SLSLSEQRTE LLSSSSIKPI TTRAGGTGTV PSSTTSAVSH PEPAETNKDN  180
SASIEAKTSG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g021460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454104.11e-130PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN32e-87C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLR0HAE21e-101R0HAE2_9BRAS; Uncharacterized protein
STRINGXP_010454104.11e-130(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-81C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]