PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g021670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 106aa MW: 11461.4 Da PI: 7.3717

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g021670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	78.1	1.2e-24	51	103	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y +ClkNh a++Gg ++DGCgEfm++ geegt++al C+ACgCHR+FH ++ Csa13g021670.1 51 VKYGKCLKNHMAHMGGRcSLDGCGEFMAA-GEEGTPEALSCSACGCHRSFHDKD 103 89************7369****9.999****************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-14	51	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.6E-23	51	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.9E-22	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.582	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MESQKTIVGI FLPAERKELP RLSSVVAAVA MYVFIGNMLK RLEIDMSTAI VKYGKCLKNH 60 MAHMGGRCSL DGCGEFMAAG EEGTPEALSC SACGCHRSFH DKDYL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g021670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420655.1	6e-40	PREDICTED: zinc-finger homeodomain protein 8-like
Refseq	XP_010454130.1	5e-40	PREDICTED: zinc-finger homeodomain protein 8-like
TrEMBL	A0A1J3ELS0	3e-20	A0A1J3ELS0_NOCCA; Mini zinc finger protein 1 (Fragment)
STRING	XP_010420655.1	2e-39	(Camelina sativa)
STRING	XP_010454130.1	2e-39	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	9e-21	homeobox protein 21