PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g025310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 175aa    MW: 19090.1 Da    PI: 4.5652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g025310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19656155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +k +g+WvAeIr p++   r r++lg+f +ae+Aa+a +aa  +l+g
  Csa13g025310.1  6 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFESAEKAARAFDAALYCLRG 56
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-11656IPR001471AP2/ERF domain
CDDcd000181.14E-27666No hitNo description
PROSITE profilePS5103221.707764IPR001471AP2/ERF domain
SMARTSM003803.3E-29770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-29765IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21766IPR016177DNA-binding domain
PRINTSPR003672.6E-9819IPR001471AP2/ERF domain
PRINTSPR003672.6E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDAASPKYTG VRKRKWGKWV AEIRLPNSRE RIWLGSFESA EKAARAFDAA LYCLRGPGAR  60
FNFPDNPPVI PGGRSLTPQQ IQVVASRFAC EEEEDQLVPP QPSPPRGEHK TEEEEEEIIS  120
ARGGMSGGSG GPMLGQVEQG NNINNEGTNS SNDTSSYWPF IWEDENLVGP QTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-163641072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g025310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496785.11e-104PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-89ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLD7M0S12e-87D7M0S1_ARALL; Uncharacterized protein
STRINGXP_010496785.11e-103(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.18e-77ERF family protein