PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g027860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 266aa MW: 28595.6 Da PI: 10.3913

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g027860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.5	2e-37	34	153	3	129
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +sn+s + Csa13g027860.1 34 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTSlssslldhk 127 79*************************************************************99999777.23333333322222334444444 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakarararertrek 129 + a e +++ Csa13g027860.1 128 pttllgssspfilgkrvR--------------------------------ADEDNHNH 153 555544333333322221................................22211111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-34	39	170	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSIHNNNNNG VMISSSSNGS ALIEQQQQSS SVVVKKPPAK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTASVSI RGSNNSTSLS 120 SSLLDHKPTT LLGSSSPFIL GKRVRADEDN HNHNNNNSSG GKDESFTTTT PAGFWAVPAR 180 PDFGQVWSFT GGGAPVQEMF LQQQHHHHHH QQPLFVHHHQ QQQQQAAMGE ASAARVGNYL 240 PGHLNLLASL SGGSPGSGRR DEDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g027860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454608.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-130	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A178UB73	1e-125	A0A178UB73_ARATH; Uncharacterized protein
STRING	XP_010454608.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-82	TCP family protein