PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g030290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 218aa    MW: 24382.2 Da    PI: 8.3311
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g030290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP33.98.3e-11135161127
                     --SSTT-----TT--HHHHHTT--HHH CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevh 27 
                     +Cqve+C ad++++k+yhrrhkvC + 
  Csa13g030290.1 135 ACQVENCGADFTKVKDYHRRHKVCVFV 161
                     5***********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-10130160IPR004333Transcription factor, SBP-box
PROSITE profilePS511418.665133213IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-9135163IPR004333Transcription factor, SBP-box
PfamPF031102.7E-5136159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNWILFFVFY FSIFFSIWGF VMEARRTQGG EEEGHIYFGF SGKTSVVEWD LNDWKWDGHL  60
FVARQLNHGS SNTSSACSDE ATVVDIMENM NKRKAVTVIP MDDDDTPKLT LNLGGCGGSN  120
IAKKTKFGGG LQTRACQVEN CGADFTKVKD YHRRHKVCVF VRCILKLLVH LLEVLCSGFV  180
SNVAGFMCLK SLMKEREVVV NVWLGIISVG GKRSCRT*
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g030290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936584e-69AB493658.1 Arabidopsis thaliana At3g60030 mRNA for hypothetical protein, partial cds, clone: RAAt3g60030.
GenBankAJ1320964e-69AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
GenBankAY0910244e-69AY091024.1 Arabidopsis thaliana At3g60030 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454774.11e-160PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
SwissprotQ9S7P55e-40SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLD7LWK11e-45D7LWK1_ARALL; Uncharacterized protein
STRINGXP_010454774.11e-160(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.17e-42squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]