PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g031050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 440aa    MW: 48446.8 Da    PI: 6.4628
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g031050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073764092154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa13g031050.1 376 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 409
                     469*****************************87 PP
2ELK28.82.9e-10330351122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Csa13g031050.1 330 ELKHELKQGYKEKIVDIREEIL 351
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19165209IPR005540KNOX1
PfamPF037901.2E-17168208IPR005540KNOX1
SMARTSM012562.5E-29221276IPR005541KNOX2
PfamPF037912.8E-21225275IPR005541KNOX2
SMARTSM011886.1E-4330351IPR005539ELK domain
PROSITE profilePS512139.969330350IPR005539ELK domain
PfamPF037891.0E-6330351IPR005539ELK domain
PROSITE profilePS5007111.726350413IPR001356Homeobox domain
SuperFamilySSF466895.56E-16352416IPR009057Homeodomain-like
SMARTSM003892.4E-11352417IPR001356Homeobox domain
CDDcd000862.77E-12353414No hitNo description
Gene3DG3DSA:1.10.10.603.7E-25357414IPR009057Homeodomain-like
PfamPF059201.2E-17370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPQP PPPRQPQQQH FQEAPPPNWL NSALLRSSDN  60
NGNNNFLNLH TATANTTTAS SSDSPSSAAV AANQWLSRSS SFLQRNNNNN ATASAVVGDG  120
IDDVTGKGGG GPETMIGGEM KSGGDYKNDG GGVAVADGVV CWQNARHKAE ILSHPLYEQL  180
LSAHVACLRI ATPVDQLPRI DAQLAQSQHV VAKYSALGAA AQGLVGDDKE LDQFMTHYVL  240
LLCSFKEQLQ QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGMGATMSDD EDEQVESDAN  300
MFDGSLDVLG FGPLVPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP  360
GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV  420
LKNKRKSNAG DNSGRERFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12353417872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g031050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454842.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLR0HAQ00.0R0HAQ0_9BRAS; Uncharacterized protein
STRINGXP_010454842.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]