PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g033700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 227aa    MW: 24676.5 Da    PI: 5.0808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g033700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183383155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Csa13g033700.1 33 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 83
                    68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-133383IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-213492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-313492IPR001471AP2/ERF domain
PROSITE profilePS5103223.6573491IPR001471AP2/ERF domain
SMARTSM003806.5E-343497IPR001471AP2/ERF domain
PRINTSPR003675.3E-103546IPR001471AP2/ERF domain
CDDcd000186.99E-323593No hitNo description
PRINTSPR003675.3E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIASKTTTPK TSLASQESKE EKTKPVRDSG KYPVYRGVRK RNWGKWVSEI REPRKKSRIW  60
LGTFPSPEMA ARAHDVAALS IKGASAILNF PDLAGSFPRP SSLSPRDIQA AALKAAQMEI  120
MTTTTTTSQS SSSSFFTFSS SQSSSSLESL VSSSGTGSEE LGEIVELPSL GSSYDGSTQL  180
GQDFIFSDST TDLWVYPPLW SEGDYEMVPS ALLSQDWDLQ GLYNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1835911572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g033700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-103AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankAY5608551e-103AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds.
GenBankBT0249231e-103BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds.
GenBankCP0026881e-103CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX946981e-103X94698.1 A.thaliana TINY mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454922.11e-163PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391271e-106TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLR0FJ321e-110R0FJ32_9BRAS; Uncharacterized protein
STRINGXP_010454922.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]