PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g038050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 696aa    MW: 79562.5 Da    PI: 6.4224
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g038050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.6e-2483174190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w v+++++ HnHel 
  Csa13g038050.1  83 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKAHVEHPRERKSVRCGCDAKLYLTKEVvdgVTHWFVSQFSNVHNHELL 174
                     69********************8888.*******************************************99866789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-2283174IPR004330FAR1 DNA binding domain
PfamPF105513.3E-22306399IPR018289MULE transposase domain
PROSITE profilePS509669.644575613IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-7585612IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSLKPLNNIW IRRQQCPCGD WKCYIRFEGN ESSCLVTKSE LDSSTTTTTT TTATGTGSSL  60
YDNNTVFMPY VGQIFTTDDD AFEYYSTFAR KSGFSIRKAR STESQNLGVY RRDFVCYRSG  120
FNQPRKKAHV EHPRERKSVR CGCDAKLYLT KEVVDGVTHW FVSQFSNVHN HELLEDDQVR  180
LLPAYRKIHQ SDQDRILLLS KAGFPVNRIV KLLELEKGVQ AGHLPFIEKD VRNFVRACKK  240
SVQENDAFLS EKRESDTLEL LESCKALAER DMDFAYDCTS DENQKVENLA WAFGDSVGAY  300
SLFGDVVVFD TTYRSIPYGL LLGVFFGIDN NGKAILVGCV LLQDESCLSF TWALQTFVRF  360
MRGRHPQTIL TDMDTGLKDA IAREMPNTHH VVFMWHIVSK LASWFSQTLG SHYDEFRAGF  420
EMFCRAGNID EFEQQWNLLV TRFGLVPDRH AALLYSCRAS WSPCYIREHF VAQTMTPEFN  480
LSIDSFFKRI VAGPTCMQLL LEEVSAAASL ARQIPSRFTY PSLKTCMPME DQARGILTPY  540
AFSVLQNELV LSVQYAVSEM ANGPYIVHHF KKMERECCVI WNPENEEIQC SCKEFEHSGI  600
LCRHTLRVLT VKNCFLIPEQ YFLLRWRQES PHVAAENQNG QGIGDDCAQT FHSLTETLLT  660
ESMICKDRLD YANQELSLLI DRVRNVAPAN CLYQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g038050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455178.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGXP_010455178.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]