PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g038100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 217aa MW: 24190 Da PI: 10.3776

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g038100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	149	206	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ Csa13g038100.1 149 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 206 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.5E-7	125	145	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.3E-34	135	206	IPR003657	WRKY domain
PROSITE profile	PS50811	29.666	142	208	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-27	143	207	IPR003657	WRKY domain
SMART	SM00774	5.5E-37	147	207	IPR003657	WRKY domain
Pfam	PF03106	8.8E-27	149	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEEVKAANKA AVESCHRVLN LLSQQINDSK SLMVETRESV SKFKRVSSLL TRGLGQRKIK 60 KLNSNYSLLP QHMFLESPIC GNNAINGCIP VLAPKPLQVV PAGYGAIDPK QKPSHHPSLM 120 LFNQKMKLRV KRSIKVPAIS NKNADIPPDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP 180 ARKHVERCVD ETSMLIVTYE GEHNHSRLPS SQSAYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	145	209	12	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g038100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF426255	1e-100	AF426255.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBank	AF442398	1e-100	AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288217.1	3e-57	probable WRKY transcription factor 74
Swissprot	Q93WU6	3e-57	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A4D6N2L3	4e-68	A0A4D6N2L3_VIGUN; WRKY transcription factor 22
STRING	GSMUA_Achr9P10740_001	2e-64	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-58	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]