PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g041430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 482aa    MW: 53516.7 Da    PI: 5.1995
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g041430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3236.2e-991044741373
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppse..tseknsseelaalklfsevsPi 90 
                     lv+lL+++Aea +   ++ el++ +Larl++l+sp + ++m+Rlaa+ft +L + l r     ++ l+p++  ++ ++++++++a+++++++sP+
  Csa13g041430.1 104 LVHLLVAAAEASTGasKSRELTRVILARLKDLVSPGDrTNMERLAAHFTDGLTKLLER-----VNVLRPNNhcSDVYDQADVISAFQMLQNMSPY 193
                     689*******99762266779**************9989*******************.....3333333300333569**************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                     ++f++lt+ qaIle+v+ e+r+Hi+D+di +G+QWp+L+qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+f+  
  Csa13g041430.1 194 VNFGYLTTTQAILESVKYERRIHIVDYDIAEGIQWPSLMQALLSRNtgTSAQHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSFHH- 287
                     **********************************************655577*********999999999***********************9. PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl 275
                        + +++++++L++ +gEa+++n++l+l r+ +++ ++     ++L   k+l+Pk+v++v++e+ + +++ Fl rf++ l+ + a+fdslea++
  Csa13g041430.1 288 CKLDNDAFNTSSLKLVRGEAVVINCMLHLPRFSHKTPNSVI---SFLLEAKTLKPKLVTLVHEEVGLmGNQCFLYRFMDLLHQFPAIFDSLEAGI 379
                     67799***************************977777666...9*********************99**************************7 PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvs 369
                          +r +vEr+++g+++ n+++  +a+   + e++++W ++le+ GF+++++s  + +qaklll+ ++ dgy+vee  ++ lv+gWk+r+Lvs
  Csa13g041430.1 380 --SVPARGFVERVFIGPWVANWLTRITAD-DSEVESFASWPQWLETNGFEAMEVSFANRCQAKLLLSLFN-DGYSVEELgQNGLVFGWKSRRLVS 470
                     ..669***********************9.9999************************************.******98789999********** PP

            GRAS 370 vSaW 373
                     +S+W
  Csa13g041430.1 471 ASFW 474
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.8878455IPR005202Transcription factor GRAS
PfamPF035142.1E-96104474IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.804.2E-4136214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MTMNYPYEDF LDLFFSTKTN TPATAANTSS CGYSLNDLDI DWDCDFRDVI ESIMGDEGVI  60
METESAPMLH GQEGISNSTS TGLSVTDGVS VEEPKLDESK GLRLVHLLVA AAEASTGASK  120
SRELTRVILA RLKDLVSPGD RTNMERLAAH FTDGLTKLLE RVNVLRPNNH CSDVYDQADV  180
ISAFQMLQNM SPYVNFGYLT TTQAILESVK YERRIHIVDY DIAEGIQWPS LMQALLSRNT  240
GTSAQHLRIT ALSRATNGKK SVAAVQEAGR RLTAFAESIG QPFSFHHCKL DNDAFNTSSL  300
KLVRGEAVVI NCMLHLPRFS HKTPNSVISF LLEAKTLKPK LVTLVHEEVG LMGNQCFLYR  360
FMDLLHQFPA IFDSLEAGIS VPARGFVERV FIGPWVANWL TRITADDSEV ESFASWPQWL  420
ETNGFEAMEV SFANRCQAKL LLSLFNDGYS VEELGQNGLV FGWKSRRLVS ASFWASHESN  480
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4112847441378Protein SCARECROW
5b3h_A4e-4112847440377Protein SCARECROW
5b3h_D4e-4112847440377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g041430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455246.10.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLR0HD470.0R0HD47_9BRAS; Uncharacterized protein
STRINGXP_010455246.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein