PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g041910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 235aa MW: 26878.9 Da PI: 5.1603

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g041910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9e-21	79	161	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l Csa13g041910.1 79 YQKYGGSHGFDVRKQRRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEQNHNHDLL 161 9**********9986665..7779**********98777...999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	78	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEQNHNHDL LTLCANEDAI QLLRKLEEKK 180 KELVKANAWM PQSSDVGLVE EEEEVEDKEV PNARGIKRKA SIGRPKNQKV GPHG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g041910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456530.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	R0EZH3	4e-60	R0EZH3_9BRAS; Uncharacterized protein
STRING	XP_010456530.1	1e-108	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-17	FAR1 family protein