PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g048850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 376aa    MW: 39535.8 Da    PI: 4.5142
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g048850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35601522103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++elisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++
  Csa13g048850.1  60 FLTKTYQLVDDPVYDELISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRD 145
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  Csa13g048850.1 146 IQRRKIS 152
                     ****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-5956149IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3557149IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-3857149IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-206083IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3160149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-20111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.7E-5224251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGAGGGGS GGGGGGGGGG DSQRSIPTPF  60
LTKTYQLVDD PVYDELISWN DDGTSFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF  120
RKVVPDRWEF SNDCFRRGEK ILLRDIQRRK ISQPAMAAAA AAAAAAVAAS AVTAVPVVAH  180
AVSPSNSGEE QVISSNSSPA AAAAATGVVG VGLQRTTSCT TAPELVEENE RLRKENMQLS  240
QELTKLKGLY ANIYTLMANF TPGQADCANL LREGKPLDLL PEKQGMSEEA MAMASRIDAG  300
SDLKLDDDLT PRLFGVSIGF KRARREEELG AAEEEDDDRQ DAVAREGEES SDVKPEPMEE  360
NNSSNHNGPW LELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-28291491129Heat shock factor protein 1
5d5v_B7e-28291491129Heat shock factor protein 1
5d5v_D7e-28291491129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g048850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0932060.0AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084710.0BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455582.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-168HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0260.0V4N026_EUTSA; Uncharacterized protein
STRINGXP_010455582.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-151HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]