PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g050430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 412aa    MW: 46997.1 Da    PI: 5.2695
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g050430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.53.5e-19189247155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F  ave++       Pk il++    m+v+gLt+++v+SHLQkYR 
  Csa13g050430.1 189 KPRMSWTAELHQKFEAAVEKISRVGTPYPKDILKCmqeeMNVQGLTRNNVASHLQKYRE 247
                     79*******************88888889***9872333589****************5 PP
2Response_reg47.21.2e-164112225105
                     EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
    Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                     +++  ++geea++ l +++  +Dl++   +mp+++Gl++l +i  e   lp++v++ ++++e++ + +k Ga dfl+Kp+++e
  Csa13g050430.1  41 VITIYETGEEAMAFLMKSKheIDLVIWNFDMPDISGLDALNTIGIEM-YLPVVVMSHEQNKEMVMKSIKNGACDFLVKPMSKE 122
                     5678899*******9666667**********************5543.6******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.84417132IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.2E-518127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.49E-1241127No hitNo description
PfamPF000727.9E-1341122IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.01E-1742138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.9E-1942170No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20186249IPR009057Homeodomain-like
SuperFamilySSF466894.3E-14186251IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-16189247IPR006447Myb domain, plants
PfamPF002492.3E-6191246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAFLMKSKHE IDLVIWNFDM PDISGLDALN TIGIEMYLPV VITIYETGEE AMAFLMKSKH  60
EIDLVIWNFD MPDISGLDAL NTIGIEMYLP VVVMSHEQNK EMVMKSIKNG ACDFLVKPMS  120
KEVVAVLWQH VFRKRMMSKY GLDQPGELDT VESDSDEFDN LKQDDLYHNN GEGSRNTSDQ  180
KEVKSTSKKP RMSWTAELHQ KFEAAVEKIS RVGTPYPKDI LKCMQEEMNV QGLTRNNVAS  240
HLQKYRESYN KKTCSPQETC QEDFNWRNAG QDPPLTASNP LLSSNVNLQT TPPFCMTDQA  300
APRTSHFMND QAAVKAPYSS NGYPPMNNFI MANHVTYIPQ PPQLHHSLNL PSMLPKQEQG  360
SLVIDNSDLI YNKSFDYGEY FPHAGFNNNN INSWSFPPPG FNNNFDNQIR RN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g050430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456885.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-130ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD91e-158R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010456885.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-127response regulator 20