PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g052340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 162aa    MW: 18719.4 Da    PI: 10.1609
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g052340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.42.1e-251568255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     r++Wt++ H+ Fveave LGG+  AtPk+il+ m+  +Ltl++vkSHLQ+YR 
  Csa13g052340.1 15 SRMHWTHDRHHLFVEAVEVLGGERTATPKKILKYMGGRDLTLSQVKSHLQMYRN 68
                    69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8361171IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-231169IPR009057Homeodomain-like
SuperFamilySSF466891.94E-161571IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-231570IPR006447Myb domain, plants
PfamPF002499.3E-91667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRDAIVRSYI RSTMSRMHWT HDRHHLFVEA VEVLGGERTA TPKKILKYMG GRDLTLSQVK  60
SHLQMYRNKK EGVSVKERRM IRKMNQMQSQ QYLMIYEHIQ DAIQNQQNTR KVTPMEVSCK  120
SLYQSSRVGE NENRNNDVIA AGDGANGKED MSLELTLGLK Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g052340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455745.21e-108PREDICTED: transcription repressor KAN1-like
TrEMBLR0HDE72e-67R0HDE7_9BRAS; Uncharacterized protein
STRINGXP_010455745.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-54G2-like family protein