PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g054520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 423aa MW: 46299 Da PI: 5.0922

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g054520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.9e-15	235	288	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++k+ rr+ +NRe+ArrsR+RK++++ Le+ v eL++e ++L k+l++++ ++ Csa13g054520.1 235 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNELKGEHSSLLKQLSNMNHKY 288 789*****************************************8888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-20	233	297	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.0E-13	234	287	No hit	No description
Pfam	PF00170	9.9E-15	235	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	235	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-12	236	287	No hit	No description
PROSITE pattern	PS00036	0	240	255	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.1E-13	304	404	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MNSSIFSIDD FSDPFWESPP IPLNPDSSSK SVTAAEEASH SQSEWTFEMF LEEFSSSAVS 60 SEPLGNDAIV GVSSAQSLPS VSGQNDFEDD CRFRDRDSGN RDCAAATVVD DYHRVLKNKL 120 ETECATVVSL RAGSVKPEDS TGSPETQFQP VQSSPLTQGI VLSKWNMTNQ IKVEMDSCGS 180 LVAPGGVGCT SSLPAELKKT GVPMKQVTSG SSREYSDDDD LDEENETTGS LNPEDVKKSR 240 RMLSNRESAR RSRRRKQEQT SDLETQVNEL KGEHSSLLKQ LSNMNHKYDD AAVGNRILKA 300 DIETLRAKVK MAEETVKRVT GMNPMLLGRS SGHNNNNRMP LTGNNRMDSS SNIPAFQPHS 360 NLNHMSNTSV GIPTTLPPRL GNNFVPPPSL NSQLQRIRNG QNHHVAPNAN PYGWTAEPQN 420 DSA

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MNSSIFSIDD FSDPFWESPP IPLNPDSSSK SVTAAEEASH SQSEWTFEMF LEEFSSSAVS  60
SEPLGNDAIV GVSSAQSLPS VSGQNDFEDD CRFRDRDSGN RDCAAATVVD DYHRVLKNKL  120
ETECATVVSL RAGSVKPEDS TGSPETQFQP VQSSPLTQGI VLSKWNMTNQ IKVEMDSCGS  180
LVAPGGVGCT SSLPAELKKT GVPMKQVTSG SSREYSDDDD LDEENETTGS LNPEDVKKSR  240
RMLSNRESAR RSRRRKQEQT SDLETQVNEL KGEHSSLLKQ LSNMNHKYDD AAVGNRILKA  300
DIETLRAKVK MAEETVKRVT GMNPMLLGRS SGHNNNNRMP LTGNNRMDSS SNIPAFQPHS  360
NLNHMSNTSV GIPTTLPPRL GNNFVPPPSL NSQLQRIRNG QNHHVAPNAN PYGWTAEPQN  420
DSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	256	RRSRRRKQ
2	251	256	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:16810321, ECO:0000269\|PubMed:16957775, ECO:0000269\|PubMed:19261733, ECO:0000269\|PubMed:19531597}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g054520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF310222	0.0	AF310222.1 Arabidopsis thaliana bZIP protein BZO2H1 mRNA, complete cds, alternatively spliced.
GenBank	BT025558	0.0	BT025558.1 Arabidopsis thaliana At4g02640 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456003.1	0.0	PREDICTED: basic leucine zipper 10-like isoform X1
Swissprot	O22763	0.0	BZP10_ARATH; Basic leucine zipper 10
TrEMBL	A0A1P8B7A6	0.0	A0A1P8B7A6_ARATH; BZIP transcription factor family protein
STRING	XP_010456003.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14871	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02640.2	0.0	bZIP family protein

Publications ? help Back to Top
Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]