PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g055590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 491aa    MW: 53819.2 Da    PI: 6.0842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g055590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31238297159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Csa13g055590.1 238 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 297
                     58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-33223299IPR003657WRKY domain
SuperFamilySSF1182901.24E-27231299IPR003657WRKY domain
PROSITE profilePS5081128.713233299IPR003657WRKY domain
SMARTSM007741.6E-37238298IPR003657WRKY domain
PfamPF031061.5E-26239297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEEHTQDRRE IAFLHSGEFP RGDSDDSEDH QPNESSEEHR HESSIKEVDF FSAKSQPYDD  60
IGHVRTTTTI VGSSGFNDDL VMVNSCHGTS SDDGDDKTKT KTQIIRLKLE LARLHEENYK  120
LKHLLDEISE SYNNLQRRVL LVRQTQVEGL HKQHEDIPQA GSSQALEDMN NEIAATTLKR  180
RSPDDVDDRD MHQGRSPKTP RLDQNKSNNP DEQQNPHDQL PFRKARVSVR ARSDATSVND  240
GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDTTILTTTY EGNHNHPLPP  300
SATAMAATTS AAAAMLLSGS TTSNLHQTLS SPSATSSSSF YNNFPYTSTI ATLSASAPFP  360
TITLDLTNPP RPLQPPPQFL SQYGPAAFLP NANQIRSINN NNNPQLLLPN LLGPQALPRD  420
MVDSVRAAIA MDPNFTAALA AAISNIIGGG NNDNNNNDII NDNKVDAKSG GSSNGDSPQL  480
PQSCTTFSTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22225300175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g055590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4801650.0AF480165.1 Arabidopsis thaliana WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
GenBankAK2295220.0AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10.
GenBankBT0087040.0BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds.
GenBankBT0290240.0BT029024.1 Arabidopsis thaliana At4g01720 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456128.10.0PREDICTED: probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLQ0WNC30.0Q0WNC3_ARATH; At4g01720
STRINGXP_010456128.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein