PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14781s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 107aa    MW: 12386.2 Da    PI: 8.8712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14781s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS881.6e-271107252362
            GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                     +F +++++al+yy++l++sl+++   ++e+ + vEr++++++i+++++++ ++    +e+   Wr+ ++++GF+pv+ls++a++qa++ll++ ++
  Csa14781s010.1   1 PFPNGVINALQYYTTLLESLDSS---NAEAVTRVERFCVQPSIQKLLTNRYRW----MERTPPWRSLFGQCGFSPVTLSQTAETQAEYLLQRNPM 88 
                     599*****************999...78999**********************....99************************************ PP

            GRAS 347 dgyrveee...sgslvlgW 362
                     +g+++e++     slvl+W
  Csa14781s010.1  89 RGFHLEKRqssLSSLVLCW 107
                     ******8822235678999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.927196IPR005202Transcription factor GRAS
PfamPF035145.4E-251107IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
PFPNGVINAL QYYTTLLESL DSSNAEAVTR VERFCVQPSI QKLLTNRYRW MERTPPWRSL  60
FGQCGFSPVT LSQTAETQAE YLLQRNPMRG FHLEKRQSSL SSLVLCW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14781s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622951e-110AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640621e-110AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963721e-110AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413536.12e-70PREDICTED: scarecrow-like protein 22
SwissprotQ9M0008e-64SCL22_ARATH; Scarecrow-like protein 22
TrEMBLR0H1P54e-65R0H1P5_9BRAS; Uncharacterized protein
STRINGXP_010413536.17e-70(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.13e-66GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]