PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g002010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 318aa MW: 35698.6 Da PI: 4.597

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g002010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.7e-07	261	314	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 WT eE++ l +v+++ + Wk+I ++ +R+ ++k++w+k Csa14g002010.1 261 LWTVEEEKMLMVGVEKYSKIikknmPWKKILEMGEgvfhVNRSSSDLKDKWRKM 314 6**************977******99877***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	2.2E-4	105	160	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50090	7.828	254	315	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-8	256	316	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.17E-8	258	316	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-4	258	317	IPR001005	SANT/Myb domain
CDD	cd11660	4.35E-11	262	316	No hit	No description
Pfam	PF13921	5.8E-5	262	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVRDIEDEIR VEKNHPQLGE GSLEDEIIIV EKNQPQLDEV SIVLLDSPHS VGETVEEIGS 60 VSEKLNEHCN VYCDDDFESA LNIFPYVHVP PKKGNFWNYE ICTSSELSTA CILCDLADDS 120 VVPCSGKDCP LAVHMKCAEL DCEEDPAASS YCPYCWLKYQ ATSSMAVAAA KAHEHSSAHM 180 SDTELKSGVI AMARENVQLE DGSDKTLPMQ LHENLHQIRK AVEQLKALNL HLDESADQFI 240 DMEKACGEAS VVVNDQPKRV LWTVEEEKML MVGVEKYSKI IKKNMPWKKI LEMGEGVFHV 300 NRSSSDLKDK WRKMVRM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g002010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462525.1	0.0	PREDICTED: uncharacterized protein LOC104743106
TrEMBL	A0A1P8AUQ9	1e-113	A0A1P8AUQ9_ARATH; Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein
STRING	XP_010462525.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27