PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g002230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 226aa MW: 25813.6 Da PI: 7.4988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g002230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.4	5.7e-36	10	139	3	128
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 GfrF t+ee++++yL+ k +e+++ +++evi++v+i++++Pw+Lp+ v++++ wyfF + ++ky+tg+r+nr+t++g+Wk+tg++ ++ Csa14g002230.1 10 IGFRFCLTEEEIIDYYLRIKnLESNTSHVDEVISTVNICSSDPWHLPSmattIVETTDLVWYFFGRIENKYNTGDRQNRKTHTGFWKKTGETVDI 104 7**************988355555888889***********5345434445569********************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k ++e++g k++L+fy + g +++Wvmhey++ Csa14g002230.1 105 KRKsgNREKIGEKRVLMFY---LKGGLNSKWVMHEYHA 139 99888889*******...5667789*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-38	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	37.421	8	159	IPR003441	NAC domain
Pfam	PF02365	1.2E-19	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSLSKLANTI GFRFCLTEEE IIDYYLRIKN LESNTSHVDE VISTVNICSS DPWHLPSMAT 60 TIVETTDLVW YFFGRIENKY NTGDRQNRKT HTGFWKKTGE TVDIKRKSGN REKIGEKRVL 120 MFYLKGGLNS KWVMHEYHAT FFSPPNQMMT YTLCKVEFKG EMREIEKSRS LYPAPMSNDN 180 IGGLMIKNPC QITGSPLDLV ATDWAMGNIL NPDFVGLLDG NDMKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-17	3	156	15	165	NAC domain-containing protein 19
3swm_B	6e-17	3	156	15	165	NAC domain-containing protein 19
3swm_C	6e-17	3	156	15	165	NAC domain-containing protein 19
3swm_D	6e-17	3	156	15	165	NAC domain-containing protein 19
3swp_A	6e-17	3	156	15	165	NAC domain-containing protein 19
3swp_B	6e-17	3	156	15	165	NAC domain-containing protein 19
3swp_C	6e-17	3	156	15	165	NAC domain-containing protein 19
3swp_D	6e-17	3	156	15	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g002230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457193.1	1e-170	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	3e-80	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	R0I7D2	1e-110	R0I7D2_9BRAS; Uncharacterized protein
STRING	XP_010457193.1	1e-169	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-82	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]