PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g005630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 172aa    MW: 19572.5 Da    PI: 9.9694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g005630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06931223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ C+++F ++ +L  Hi+  H
  Csa14g005630.1  9 ECGVCKRVFISPQHLIAHINAfH 31
                    6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642836IPR007087Zinc finger, C2H2
PROSITE patternPS0002801031IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRPYSKPQEC GVCKRVFISP QHLIAHINAF HSNRHFPTLS SPAAASPTTF RHYSNQLMNR  60
NRNPNPLAFQ ARTHLDYYRS GYLDDQGNFH KGFPPAPAAM MTPARKYKFL LLKTPKISKT  120
PKLIDLFPEE TSLECIRTLP LLCQLEQRRP EETVTENGGT NSSYIDLSLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g005630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462555.11e-125PREDICTED: uncharacterized protein LOC104743140
TrEMBLR0GLU45e-80R0GLU4_9BRAS; Uncharacterized protein
STRINGXP_010462555.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.19e-52C2H2-like zinc finger protein