PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g007460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 269aa MW: 29026.2 Da PI: 6.2574

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g007460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	218	265	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l Csa14g007460.1 218 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLL 265 9****************************************9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-5	214	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.887	216	266	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-9	218	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-10	218	266	No hit	No description
SuperFamily	SSF57959	2.53E-10	218	266	No hit	No description
CDD	cd14703	6.22E-24	219	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDKEKSPAPP PSGGLPPPSG RYSTFSPNAS SFAMKAESSF PPPHLTPTGS SSSSADATNR 60 FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGAADGPSFS DDTDEDLMYM 120 YLDMDKFNSS ATSTSQMVEP SEPAWRNELG VSTSNLQSAP GSSSERPRIR HQHSQSMDGS 180 TTIKPEMLMS GNEDVSGVDS KKAISAAKLS ELALIDPKRA KRIWANRQSA ARSKERKMRY 240 IAELERKVQT LQTEATSLSA QLTLLQVG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g007460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419854	0.0	AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AK229666	0.0	AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBank	BT028965	0.0	BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457722.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_019091858.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-120	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0INM3	1e-159	R0INM3_9BRAS; Uncharacterized protein
STRING	XP_010457722.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-150	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]