PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g007690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 212aa MW: 24014.7 Da PI: 9.6481

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g007690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.6	2e-33	25	116	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+py+pa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g ++++ ++l+ k+ Csa14g007690.1 25 ACASCKHQRKKCNNECILSPYYPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRVCEELKLYKS 116 7**********************************************************************************999998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.782	24	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-30	25	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MMQRNSNTTT NNNNNISNNS SSHQACASCK HQRKKCNNEC ILSPYYPARK TKEFQAVHKV 60 FGVSNVQKMV RTVREEDRTK LSDSLTWEAL WRQKDPVLGS YGEYRRVCEE LKLYKSLVHN 120 QPLLGWDNNH QRVYTNNNNN KTGLVMNSSG SVGFCVNNNG VGGVNGEIVN GGSYTSRDLQ 180 GGWENLKHDQ RQQCYAAVIN GFKQGQYYLP R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-17	26	102	12	88	LOB family transfactor Ramosa2.1
5ly0_B	3e-17	26	102	12	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g007690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473865	0.0	AB473865.1 Arabidopsis thaliana ASL32 mRNA for ASYMMETRIC LEAVES2-like 32 protein, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9P14	0.0	AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457753.1	1e-157	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-111	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	V4MVQ1	1e-110	V4MVQ1_EUTSA; Uncharacterized protein
STRING	XP_010457753.1	1e-157	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-97	LOB domain-containing protein 2