PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g008900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 866aa MW: 99209.2 Da PI: 5.6937

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g008900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	323.3	4.8e-99	333	695	2	359
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL+ cA+ vs+gd+ a+ lL ++++++sp gd+ qRla++f++AL+arl++ s++++ + + ++++++ +++l+++++f +sP++++ + Csa14g008900.1 333 RTLLTLCAQSVSAGDKITADDLLRQIRKQSSPLGDASQRLAHFFANALEARLQGiSGNTIQSYYDSITSKKRTAAQTLKSYHVFLSASPFMTLIY 427 6799************************************************8888888888999999999****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++Il+a++ ++ +HiiDf+i +G+QWp ++q L++ + g +lRiTg++ p++g +e+++ tg+rL+++++++g+pfe+n++++k++e+ Csa14g008900.1 428 FFSNKMILDAAKDASVLHIIDFGILYGFQWPMFIQHLSKNKTGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPFEYNAIASKNWET 522 *****************************************************9**************************99* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++ee++++p+E+laVn vl+ ++l d + e+ +rd +Lkl+++++P+v+ + + + n++ F +rf eal +ysalfd + a+l+re+ er Csa14g008900.1 523 IRIEEFKIRPNEVLAVNTVLRFKNLRDATPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDLFGATLSRENPER 617 **********************9999888889******************************************************* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359 i E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + ++k + + + ++e+s++++ Csa14g008900.1 618 IHFEGEFYGREVMNVIACEGIDRVERPETYKQWQVRMIRAGFKQKPVKAELVESFREKMKKWGyHKDFVLDEDSNWFL 695 *********************************************************999999*****9986 PP
2	GRAS	133.8	1.9e-41	709	862	221	373
GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 + +rd +Lkl+++++P+v+ + + + n++ F +rf eal +ysalfd + a+l+re+ eri E e+ gre++nv+aceg +r+er et+++W Csa14g008900.1 709 DCPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDLFGATLSRENPERIHFEGEFYGREVMNVIACEGIDRVERPETYKQW 803 3489***************************************************************************************** PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + r+ +aGFk+ p++ + +++ + ++k + + + ++e+s+++++gWk+r L+s S+W Csa14g008900.1 804 QVRMIRAGFKQKPVKAELVESFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 862 ************************999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.552	306	689	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-96	333	695	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-39	709	862	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	18.455	717	842	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MESKNYSGVV NGFECYDVSF LPNQIPDLGF GVPSSSDFDL RIDQYHHHQP YSIWVPASSS 60 QDDQYSPPTD EIDSENTLLK YVHQLLMEES IADNQSMFYD SLALRQTEEM LQQVINDSQT 120 QSHLPNSVTT SSSSSNSSGD YWSSSNSNSS VSIETAANST TETEVLYDNH LVDSGVVSDP 180 RSNMLQFGQP ANEVLVRSMF SDADSVMQFK RGLEEASKFL PNTDQWIFNL EAAKERVVPV 240 KEEKDWSGIS RTRKSHHARE EEEDDLEETR SSKQYAVNVE DGKLTEMFDK VLLLDGECDP 300 QIKEDGENGS NKVLQAKKGS GRGKKKSQAV DFRTLLTLCA QSVSAGDKIT ADDLLRQIRK 360 QSSPLGDASQ RLAHFFANAL EARLQGISGN TIQSYYDSIT SKKRTAAQTL KSYHVFLSAS 420 PFMTLIYFFS NKMILDAAKD ASVLHIIDFG ILYGFQWPMF IQHLSKNKTG LRKLRITGIE 480 LPQHGFRPTE RIQDTGRRLT EYCKRFGIPF EYNAIASKNW ETIRIEEFKI RPNEVLAVNT 540 VLRFKNLRDA TPGEEDCPRD GFLKLIRDMN PNVFLSSTIN GSFNAPFFTT RFKEALFHYS 600 ALFDLFGATL SRENPERIHF EGEFYGREVM NVIACEGIDR VERPETYKQW QVRMIRAGFK 660 QKPVKAELVE SFREKMKKWG YHKDFVLDED SNWFLQDXNL RDATPGEEDC PRDGFLKLIR 720 DMNPNVFLSS TINGSFNAPF FTTRFKEALF HYSALFDLFG ATLSRENPER IHFEGEFYGR 780 EVMNVIACEG IDRVERPETY KQWQVRMIRA GFKQKPVKAE LVESFREKMK KWGYHKDFVL 840 DEDSNWFLQG WKGRILFSSS CWVPS*

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MESKNYSGVV NGFECYDVSF LPNQIPDLGF GVPSSSDFDL RIDQYHHHQP YSIWVPASSS  60
QDDQYSPPTD EIDSENTLLK YVHQLLMEES IADNQSMFYD SLALRQTEEM LQQVINDSQT  120
QSHLPNSVTT SSSSSNSSGD YWSSSNSNSS VSIETAANST TETEVLYDNH LVDSGVVSDP  180
RSNMLQFGQP ANEVLVRSMF SDADSVMQFK RGLEEASKFL PNTDQWIFNL EAAKERVVPV  240
KEEKDWSGIS RTRKSHHARE EEEDDLEETR SSKQYAVNVE DGKLTEMFDK VLLLDGECDP  300
QIKEDGENGS NKVLQAKKGS GRGKKKSQAV DFRTLLTLCA QSVSAGDKIT ADDLLRQIRK  360
QSSPLGDASQ RLAHFFANAL EARLQGISGN TIQSYYDSIT SKKRTAAQTL KSYHVFLSAS  420
PFMTLIYFFS NKMILDAAKD ASVLHIIDFG ILYGFQWPMF IQHLSKNKTG LRKLRITGIE  480
LPQHGFRPTE RIQDTGRRLT EYCKRFGIPF EYNAIASKNW ETIRIEEFKI RPNEVLAVNT  540
VLRFKNLRDA TPGEEDCPRD GFLKLIRDMN PNVFLSSTIN GSFNAPFFTT RFKEALFHYS  600
ALFDLFGATL SRENPERIHF EGEFYGREVM NVIACEGIDR VERPETYKQW QVRMIRAGFK  660
QKPVKAELVE SFREKMKKWG YHKDFVLDED SNWFLQDXNL RDATPGEEDC PRDGFLKLIR  720
DMNPNVFLSS TINGSFNAPF FTTRFKEALF HYSALFDLFG ATLSRENPER IHFEGEFYGR  780
EVMNVIACEG IDRVERPETY KQWQVRMIRA GFKQKPVKAE LVESFREKMK KWGYHKDFVL  840
DEDSNWFLQG WKGRILFSSS CWVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-39	332	664	5	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g008900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493440	0.0	AB493440.1 Arabidopsis thaliana At1g07520 mRNA for hypothetical protein, partial cds, clone: RAAt1g07520.
GenBank	AC022464	0.0	AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457933.1	0.0	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	R0INN7	0.0	R0INN7_9BRAS; Uncharacterized protein
STRING	XP_010457932.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein