PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g008920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 621aa    MW: 69109.9 Da    PI: 9.7818
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g008920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07518567147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   Csa14g008920.1 518 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 567
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864513572IPR017930Myb domain
SMARTSM007177.0E-7517570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10518568IPR009057Homeodomain-like
CDDcd116601.41E-16519569No hitNo description
SuperFamilySSF466892.05E-15519600IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKNESHQI SSFDLLAAVA GKLLLEGGNS  60
SSSSNNASSG NNDDQCAVKT EPLNGRDTTV EEETTNNIAE RSFFVSEILP KSHEIQSYNR  120
SPSPLTEFHF GSSSGVTSDS SEKFETQELV YEDTKIDNSD CYRSECNDNK SMLGGLNFEA  180
KLSRNVVAKD ENHIGSGFRK PIPQNPSLCS DDIDLLGKEN DDDGENLSAR YRTKSFRSTL  240
RIGNHFASKY CKVSPKPRDT TTVTNSDLDM KHGYYSKKHC LKSQRLERNY PIKKRRYFDG  300
YTASQSEENA KTEGLSGSPR KTSGFLSSIA CQKQPAVQSR DSHVKLGIKS FRVPELFIEI  360
PETATVGSLK RTVLEALTSI LGGELRIGVL VHGKKVRDDS KILLQSGISL DTLSDTLGFC  420
LEPNPPQSTK PLPPEDSDYV RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRA  480
KTIYSRALIP VRPLHVQALT VVPPRKTKRS VVAQRRIRRP FSVAEVEALV QAVERLGTGR  540
WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ  600
QQGKHLLLEG PKKLETSLGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-565056044103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g008920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457935.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLR0GKR50.0R0GKR5_9BRAS; Uncharacterized protein
STRINGXP_010457935.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2