PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g009790.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 337aa MW: 37974.4 Da PI: 10.1768

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g009790.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	60	101	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Csa14g009790.1 60 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 101 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-7	57	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	59	103	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	60	101	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.31E-7	61	103	No hit	No description
CDD	cd14708	3.56E-21	61	113	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.2E-8	62	105	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	142	217	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSSKQNHHLM LQHHHHNNNN NMANSSSTSG LPSTSRTTLA PPKPSEDKRK ATTSGKQLDA 60 KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE LQRARSQGLF MGGCGPLGPN 120 ITSGAAMFDM EYGRWLEDDN RHMSEIRTGL QAHLSDNDLR LIVDGYIAHF DEIFRLKAVA 180 AKADVFHLII GTWMSPAERC FIWMAGFRPS DLIKILVSQM DLLTEQQLMG IYSLQHSSQQ 240 AEEALSQGLE QLQQSLIDTL AASPVMDGMQ QMAVALGKIS NLEGFIRQAD NLRQQTVHQL 300 RRILTVRQAA RCFLVIGEYY GRLRALSSLW LSRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g009790.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	AK222204	0.0	AK222204.1 Arabidopsis thaliana mRNA for bZip protein AtbZip21, complete cds, clone: RAFL25-08-O22.
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458068.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A178WGY8	0.0	A0A178WGY8_ARATH; TGA9
STRING	XP_010458068.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]