PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g012170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 176aa    MW: 20307.4 Da    PI: 10.8844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g012170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000111656247
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47
                    r+  n rE+ RR r+++ f+ L +++ +      ++l   +   + 
  Csa14g012170.1 16 REQRNLREKERRMRMKHLFSILSSHVSPT-----RRLPVPQLIDQS 56
                    6778*********************9885.....344444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-111288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.7661463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-51683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERAREIGEG SSSSFREQRN LREKERRMRM KHLFSILSSH VSPTRRLPVP QLIDQSVSYM  60
IQLKEKVNYL REKKRTLLRG KVQNRSEGSS SHQPKLSINS RDSTIEMNLV MDSNIKRVLL  120
RELVSVFEEE GAQVMSANLQ NLNNMTFYTI IAQAIISRIG IDSSRIEERV RCIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g012170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070672e-98AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026842e-98CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458412.11e-123PREDICTED: uncharacterized protein LOC104739674
SwissprotQ9XIJ11e-97BH168_ARATH; Transcription factor bHLH168
TrEMBLR0GT314e-99R0GT31_9BRAS; Uncharacterized protein
STRINGXP_010458412.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-84bHLH family protein