PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g016930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 519aa    MW: 56410.9 Da    PI: 8.3088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g016930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12.1e-34233289259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnhe
  Csa14g016930.1 233 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 289
                     8****************************************.***************8 PP
2WRKY106.21.7e-33412470159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Csa14g016930.1 412 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 470
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30227291IPR003657WRKY domain
SuperFamilySSF1182901.83E-26231291IPR003657WRKY domain
SMARTSM007744.4E-39232290IPR003657WRKY domain
PfamPF031061.8E-26233289IPR003657WRKY domain
PROSITE profilePS5081125.545233291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36397472IPR003657WRKY domain
SuperFamilySSF1182901.44E-29404472IPR003657WRKY domain
PROSITE profilePS5081137.975407472IPR003657WRKY domain
SMARTSM007743.8E-39412471IPR003657WRKY domain
PfamPF031066.2E-26413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSEKEEEVPS TSKSTGAPSR PTLSLPPRPF SEMFFNGGVG FSPGPMTLVS NMFSDSDEFR  60
SFSQLLAGAM ASPATAAASD YHQRIGADGN DNNNNSSSGG DVDPRFKQNR PTGLMISQSQ  120
SPSMFSVPPG LSPAMRLDSP SFLGLFSPVQ GSYGMTHQQA LAQVTAQAVQ ANANMQPQTE  180
YPPSSQVQSF SSGQAQIPTS APHSSVPAQR ETSDVTIIEH RSQQPLNVDK PADDGYNWRK  240
YGQKQVKGSE FPRSYYKCTS QGCPVKKKVE RSLDGQVTEI IYKGQHNHEP PQNTKRGNKD  300
STTNLNGSSI NNNRGSSELA ASQFQTNSSN KTKRDQHEAA SQATTTEHMS EASDSEEVGN  360
GETGVREKDE NEPDTKRRSI EVRVSEPAPA ASHRTVTEPR IIVQTTSEVD LLDDGYRWRK  420
YGQKVVKGNP YPRSYYKCTT PGCGVRKHVE RAATDPKAVV TTYEGKHNHD LPAAKSSSHA  480
AAAAAQLRPD NRHGGLANLN QQQQQPVARL RLKEEQTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-46233473878Probable WRKY transcription factor 4
2lex_A3e-46233473878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g016930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258350.0AF425835.1 Arabidopsis thaliana WRKY transcription factor 4 (WRKY4) mRNA, complete cds.
GenBankAY0456760.0AY045676.1 Arabidopsis thaliana At1g13960/F7A19_5 mRNA, complete cds.
GenBankBT0026290.0BT002629.1 Arabidopsis thaliana At1g13960/F7A19_5 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458864.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_010458865.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_010458866.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLR0GLP10.0R0GLP1_9BRAS; Uncharacterized protein
STRINGXP_010458864.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]