PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g017760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 300aa MW: 33637.3 Da PI: 10.0257

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g017760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	362.6	7.6e-111	15	299	1	301
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalll 86 mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ r+ nl ++++++++++++ m++ +++++ +++k++++l+ Csa14g017760.1 15 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHPQEppihMSY----NWINQ-------QKDKFFNMLP 94 9999..9***999**********.9**********.********5555555....*.......899*** PP GAGA_bind 87 venslasalpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178 v+++ p++ +vl++t+s+ s+q+ l++ +q+e+++v + e ++++ +++k+k+++k++ ++++k+kk +k+k++++++++++ Csa14g017760.1 95 VTTA-----PNYGNVLPETSSAPSMQMnLHHhhHQTEENPVV--KLE----DEVVQ--TNKKRKTNSKAGLATTTTKAKKPRKPKDENSNNNNNN 176 9997.....9*************644423555555554..222....33333..344455556667888999999***998888888 PP GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 ++ ++ +r+k kks+d+v+ngvs+D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa Csa14g017760.1 177 NNTNNVSRVKPAKKSVDMVINGVSMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLA 271 8888779************************************************************************************ PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++G++++np+DLk+hWA+HGtnkfvtir Csa14g017760.1 272 SDGFNFGNPIDLKSHWARHGTNKFVTIR 299 *************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-172	15	299	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.1E-100	15	299	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MFIIHLDFCF WIFEMDDDGF RNWGYYEPAA ATFKGNLGLQ LMSTIDRNTK PFLPGRDPNL 60 MIGPNGSYHP QEPPIHMSYN WINQQKDKFF NMLPVTTAPN YGNVLPETSS APSMQMNLHH 120 HHHQTEENPV VKLEDEVVQT NKKRKTNSKA GLATTTTKAK KPRKPKDENS NNNNNNNNTN 180 NVSRVKPAKK SVDMVINGVS MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMH 240 PLPMSTKRRG ARISGRKMSQ GAFKKVLEKL ASDGFNFGNP IDLKSHWARH GTNKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g017760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006917	0.0	AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBank	AC010657	0.0	AC010657.3 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458978.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-176	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A1J3JLW8	0.0	A0A1J3JLW8_NOCCA; Protein BASIC PENTACYSTEINE2
STRING	XP_010458978.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-176	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]