PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g021180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 678aa    MW: 76728.1 Da    PI: 5.5846
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g021180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT173.82.7e-542213381117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk. 94 
                     ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++  eapLL+sy+Gvefs+ d+p++ll+G+asf lkis Ls  +d+rLf+ikfeip++k+ 
  Csa14g021180.1 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTPVEKMSGFEAPLLVSYEGVEFSAADKPCNLLNGCASFNLKISELSPMSDERLFCIKFEIPEVKSc 315
                     8********************************************************************************************99 PP

            STAT  95 ypfleavskpirCisrsrntrss 117
                     ypfle+v+++irC+ r+r++ + 
  Csa14g021180.1 316 YPFLETVTNQIRCMLRNRESVTP 338
                     ******************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498992.53E-727165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103389.38E-67572677No hitNo description
SuperFamilySSF555508.4E-13580668IPR000980SH2 domain
Gene3DG3DSA:3.30.505.102.1E-9580639IPR000980SH2 domain
PROSITE profilePS5000110.434583651IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAGDCAINTE KYSLLEDFNV DVQVQNQGFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDDK KKLMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLHICGE LAGEQVLTSL MTNGTYFDCT RKMSLFSVGG DGYSVQGFIH CAEVLPSYVP  180
ANYHYKKDPP LLLSVDKPST SEIKLDEDGV WSIVGGTFCS LDVVLTNAIG QPVHKDVKVV  240
ASLLYADSGT PVEKMSGFEA PLLVSYEGVE FSAADKPCNL LNGCASFNLK ISELSPMSDE  300
RLFCIKFEIP EVKSCYPFLE TVTNQIRCML RNRESVTPKR SNHIDYTLDG REQKLASRNG  360
TPDILHSTSY MKRIRLGEDK VSESKFQNGN GTSMEWRPQA QNHEEEEDNS STDSENTKIK  420
DSTGFRRYTI PDSMIFRYCL SNLTERSLLL KEITNNSSDE EVSEFADQVS LYSGCSHHSY  480
QIKMARKLIA EGTNAWILIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL SHQDFELLRR  540
ICGCHEYITQ ENFEKMWCWL FPVATAISRG LINGMWRSAT PKWIEGFVTK EEAERSLQNQ  600
EPGTFILRFP GSRSWPHPDA GSLVVTYVGH DLVIHHRLLA IDHMCDSSER YTDAKPLQDM  660
LLAEPELSRL GRVVRGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g021180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459263.10.0PREDICTED: uncharacterized protein LOC104740390 isoform X3
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGXP_010459262.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]