PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g023600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 352aa    MW: 38863.2 Da    PI: 8.7322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g023600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-174892147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++eE++++++a+k++G g W+ I +++g ++t+ q++s+ qk+
   Csa14g023600.1 48 REKWSEEEHDRFLEAIKLYGRG-WRQIQEHIG-TKTAVQIRSHAQKF 92
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-164297IPR009057Homeodomain-like
PROSITE profilePS5129419.3674397IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-104495IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-164695IPR006447Myb domain, plants
SMARTSM007175.2E-134795IPR001005SANT/Myb domain
PfamPF002495.8E-154891IPR001005SANT/Myb domain
CDDcd001675.00E-115093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAAEDRSEEE LSSNVENGSC NSNEGTTSHC WTENIVKVRK PYTVTKQREK WSEEEHDRFL  60
EAIKLYGRGW RQIQEHIGTK TAVQIRSHAQ KFFSKMTQEA DTISERSNKA VVIPPPRPKR  120
KPAHPYPRKS PVPYSQSPPS NLSAMEKGTK SPTSVLSSFA SEDQNNRCSS PNSSTSDIQS  180
IGGTSINKTN DHATSKQSLK EVAVNGSTPM SSIVLFGKIV LVTEESHKPS SNTDVDDRKS  240
MTAKQNHCSG IKGLTLHIDS RHVDTDLSLG IWETSCTGSN NGSGSVTEMS ENLEKNPEKR  300
LSFLEKQGSC DPPASGFRPY KRCLSEREVT SSLSLVTSEE QKSRRRARVC S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g023600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1156960.0AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds.
GenBankAY0639520.0AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
GenBankAY1140700.0AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459445.10.0PREDICTED: protein REVEILLE 7
SwissprotB3H5A81e-177RVE7_ARATH; Protein REVEILLE 7
TrEMBLR0GQU50.0R0GQU5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010459445.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-168MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]