PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g023660.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 262aa MW: 29288.5 Da PI: 7.8335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g023660.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.7e-08	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a++L + ++Y++sLq Csa14g023660.1 156 SHSLAERVRRGKINERLRCLQDMVPGC----YKAMGMATMLDEIINYVQSLQ 203 8***********************8....355999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.08E-10	150	207	No hit	No description
SuperFamily	SSF47459	1.7E-16	150	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.364	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-16	152	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-6	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-9	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MANFENLSSD FQTIALDIYS SITQTADLNN NNSNLHFQTF HPSSTSLDSL FLLHHHQQQQ 60 SIHFRGNSPE NSNNVSSTSS FLHSDHNNVD ETKKRKALLH SLSSPENSGV SDNANIITTG 120 TGSLRGGKRL KKKKEEDGKE REVVHVRARR GQATDSHSLA ERVRRGKINE RLRCLQDMVP 180 GCYKAMGMAT MLDEIINYVQ SLQNQVEFLS MKLTAASSFY DFNSETDAVD SVQRAKARET 240 VEMGGQTRDR SPVFHLSTWS L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	RLKKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g023660.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117269	0.0	AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBank	AY138253	0.0	AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBank	BT005268	0.0	BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459453.1	0.0	PREDICTED: transcription factor BEE 1-like
Swissprot	Q8GZ13	1e-137	BEE1_ARATH; Transcription factor BEE 1
TrEMBL	A0A1J3GE25	1e-137	A0A1J3GE25_NOCCA; Transcription factor BEE 1
STRING	XP_010459453.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-134	BR enhanced expression 1

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]