PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g024230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 541aa MW: 59584.9 Da PI: 7.3732

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g024230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	240	299	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Csa14g024230.1 240 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 299 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-31	225	301	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-26	233	301	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	235	301	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	240	300	IPR003657	WRKY domain
Pfam	PF03106	6.4E-26	241	299	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MEKKDFLKST GHGGEENHEV MRKLDSSHDD SHEEHEQIIR SKLDSTKVEM EEAKEENRRL 60 KSSLSKIKKD FDILQTQYNQ LMVQHEEPKK FSPKGHRQDK DRDKDKVNER EELVSLSLGG 120 RSKSPVPSGS KMNKEENSKK IVEVGDEEKL NDYEKGSDHG LRVVAFEYKD LSNPNEKFQI 180 EHKKETISLE IGDTNKSTSE NNFGFKNDED DHDDQEELLP QNLVKKTRVS VRSRCETPTM 240 NDGCQWRKYG QKIAKGNPCP RAYYRCTIAA SCPVRKQVQR CSEDMSILIS TYEGTHNHPL 300 PMSATAMASA TSAAASMLLS GASSSSSVAA ADLHGLNFSL SGNITPKSKS PFLQTSSSSP 360 SSSGHPTITL DLTSSSSSQQ PFISMLNRFN SPTGNVSRSN SYPSTNLNFS NNTNTLQNWS 420 AGGGILSSQY RAPYGNISTH QQLPYQSIIH TRTAGSSFDP FGRSSSSSSS SHPTQTNHDH 480 IGIKNIMTHQ VPSLPAETIK AITTDPSFQS ALATALSSII GGGDLKIDHK VTRNDAEKSP 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MEKKDFLKST GHGGEENHEV MRKLDSSHDD SHEEHEQIIR SKLDSTKVEM EEAKEENRRL  60
KSSLSKIKKD FDILQTQYNQ LMVQHEEPKK FSPKGHRQDK DRDKDKVNER EELVSLSLGG  120
RSKSPVPSGS KMNKEENSKK IVEVGDEEKL NDYEKGSDHG LRVVAFEYKD LSNPNEKFQI  180
EHKKETISLE IGDTNKSTSE NNFGFKNDED DHDDQEELLP QNLVKKTRVS VRSRCETPTM  240
NDGCQWRKYG QKIAKGNPCP RAYYRCTIAA SCPVRKQVQR CSEDMSILIS TYEGTHNHPL  300
PMSATAMASA TSAAASMLLS GASSSSSVAA ADLHGLNFSL SGNITPKSKS PFLQTSSSSP  360
SSSGHPTITL DLTSSSSSQQ PFISMLNRFN SPTGNVSRSN SYPSTNLNFS NNTNTLQNWS  420
AGGGILSSQY RAPYGNISTH QQLPYQSIIH TRTAGSSFDP FGRSSSSSSS SHPTQTNHDH  480
IGIKNIMTHQ VPSLPAETIK AITTDPSFQS ALATALSSII GGGDLKIDHK VTRNDAEKSP  540
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	227	301	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g024230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459533.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A178WBT0	0.0	A0A178WBT0_ARATH; WRKY61
STRING	XP_010459533.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]