PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g024320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 306aa    MW: 33891.5 Da    PI: 6.2278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g024320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-1262103346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++
   Csa14g024320.1  62 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKMFWNT 103
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.66E-1342112IPR009057Homeodomain-like
PROSITE profilePS5129417.24555109IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-1757109IPR009057Homeodomain-like
SMARTSM007171.9E-1359107IPR001005SANT/Myb domain
PfamPF002492.2E-1162103IPR001005SANT/Myb domain
CDDcd001675.53E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVRSCSSKSK NPWANEEDTT QKFVFASASK NGSAAPKKIG LRRCGKSCRV RKTDHSGTKH  60
ESFTSEEEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKMF WNTKLKKKLS EMGIDHVTHR  120
PFSHVLAEYG NINGGGNLNP NPSNQGGPLG RNHSLNEDTH QQQPDDSGDL MFHLQAIKLM  180
TESSNQVKPE STFVYASSSS SNSSPPLFSS TCSTIAQESS ELNFTWSDFL LDHENQQSHH  240
HPQELDNLFG NDFSEVAAAT MPNTSTIASQ IEEESSSNGF VESIIAKEKE LFLGFPGYLE  300
NPFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-12101097108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g024320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459549.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A178WJ390.0A0A178WJ39_ARATH; Uncharacterized protein
STRINGXP_010459549.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-179MYB_related family protein