PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g024980.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 543aa MW: 61213.7 Da PI: 5.9693

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g024980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.5e-10	372	409	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + Csa14g024980.1 372 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 409 664459******************************88 PP
2	BELL	120.3	8.2e-39	232	303	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+elq+kk+kL+++++eVdkrY+qy++q+++++ssFe+vaglgsakpYts+Al++iSrhFr+L+dai+eqi Csa14g024980.1 232 EREELQNKKNKLMTMVDEVDKRYNQYYHQMEALASSFEIVAGLGSAKPYTSVALNRISRHFRALRDAIKEQI 303 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.0E-49	160	301	IPR006563	POX domain
Pfam	PF07526	3.3E-45	166	299	IPR006563	POX domain
PROSITE profile	PS50071	12.455	350	413	IPR001356	Homeobox domain
CDD	cd00086	5.07E-12	353	414	No hit	No description
SMART	SM00389	5.4E-10	353	417	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-17	354	420	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	356	419	IPR009057	Homeodomain-like
Pfam	PF05920	6.8E-18	370	409	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MAVYYTSNVG CYQQEPIFLN HQQQQQQQAS SSSAAASFTV TGGDNVRNEM VFIPPTTGDV 60 VTVNGAVSSS DLSFHDGQGL SLSLGTQISV PPFQYHQYQL GFTQNPSLSS VKETSTYNVD 120 EMSVKSKEML LLGQSDPSSV YAGNGGNGFY NNYRYNETSG GFMSGVLRSR YLKPAQGLLD 180 EVVSVKKELN QIGNKKMKVN DFNNGSKEIG RGGSGELSSD SNGKSIELST VEREELQNKK 240 NKLMTMVDEV DKRYNQYYHQ MEALASSFEI VAGLGSAKPY TSVALNRISR HFRALRDAIK 300 EQIQIIRDKL GEKGGESLDD QQGERIPRLR YLDQRLRQQR ALHQQLGMVR PAWRPQRGLP 360 ENSVSVLRAW LFEHFLHPYP KESEKIMLAK QTGLSKNQVA NWFINARVRL WKPMIEEMYK 420 EEFGDESELL ISKSSQEPNS TNQEDSSSQQ EQQQQENNNN HLAYSSVDTT NIAFSSEIKP 480 DRVSGNDDEP QQQQQQQMNR SADYDTLMNY QGFGLDDYRY IGGSNQQESR FSNSHHLHDF 540 VV*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MAVYYTSNVG CYQQEPIFLN HQQQQQQQAS SSSAAASFTV TGGDNVRNEM VFIPPTTGDV  60
VTVNGAVSSS DLSFHDGQGL SLSLGTQISV PPFQYHQYQL GFTQNPSLSS VKETSTYNVD  120
EMSVKSKEML LLGQSDPSSV YAGNGGNGFY NNYRYNETSG GFMSGVLRSR YLKPAQGLLD  180
EVVSVKKELN QIGNKKMKVN DFNNGSKEIG RGGSGELSSD SNGKSIELST VEREELQNKK  240
NKLMTMVDEV DKRYNQYYHQ MEALASSFEI VAGLGSAKPY TSVALNRISR HFRALRDAIK  300
EQIQIIRDKL GEKGGESLDD QQGERIPRLR YLDQRLRQQR ALHQQLGMVR PAWRPQRGLP  360
ENSVSVLRAW LFEHFLHPYP KESEKIMLAK QTGLSKNQVA NWFINARVRL WKPMIEEMYK  420
EEFGDESELL ISKSSQEPNS TNQEDSSSQQ EQQQQENNNN HLAYSSVDTT NIAFSSEIKP  480
DRVSGNDDEP QQQQQQQMNR SADYDTLMNY QGFGLDDYRY IGGSNQQESR FSNSHHLHDF  540
VV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-16	359	417	5	63	Homeobox protein Meis2
3k2a_B	7e-16	359	417	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g024980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY570508	0.0	AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459644.1	0.0	PREDICTED: BEL1-like homeodomain protein 10
Swissprot	Q9FXG8	0.0	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	R0GWD7	0.0	R0GWD7_9BRAS; Uncharacterized protein
STRING	XP_010459644.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19700.3	0.0	BEL1-like homeodomain 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]