PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g025880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 400aa MW: 45354.6 Da PI: 6.635

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g025880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa14g025880.1 77 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Homeobox	62.3	7.4e-20	277	337	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +++ + +p+ ++++e+A++l ++ e++V++WFqNrRa+ k+ Csa14g025880.1 277 RHRWTPTSKQLQILENIYKEgSGTPNPRRIKEIATELsehgQIMEKNVYNWFQNRRARSKR 337 89***************99************************************97 PP
3	Wus_type_Homeobox	100.3	1.4e-32	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa14g025880.1 76 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP
4	Wus_type_Homeobox	100.8	9.8e-33	276	339	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Csa14g025880.1 276 TRHRWTPTSKQLQILENIYKEGSGTPNPRRIKEIATELSEHGQIMEKNVYNWFQNRRARSKRKQ 339 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-16	70	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-18	70	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	73	138	IPR001356	Homeobox domain
SMART	SM00389	8.7E-14	75	142	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	8.43E-12	81	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-14	273	341	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.495	273	338	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	274	342	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-13	275	342	IPR001356	Homeobox domain
CDD	cd00086	4.82E-12	277	339	No hit	No description
Pfam	PF00046	1.3E-17	277	337	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEREIQNDAY NGRVMTEEQM EILRKQIAVY AVICDQLVLL HNSLSSYHPF SSGIRPMVGG 60 YFDQMGSSSS SHRISSRHRW TPTSTQLQIL ESIYEEGSGT PNRRRIREIA TELSEHGQIT 120 ETNVYNWFQN RRARSKRKQP QTTTTTANGQ ADDVAVTTEE RRSCGDSGGL ESYEHILFPS 180 PDLGIEHLKE RGESKFVKEE MEQGSLNGTY DGRVMTEEQM ETLRKQIAIY AIICDQLVLL 240 HNSLPSFPPL SSGMNMMGGG YFDPMVASSS AHGMSTRHRW TPTSKQLQIL ENIYKEGSGT 300 PNPRRIKEIA TELSEHGQIM EKNVYNWFQN RRARSKRKQP QTTTVTGPTD DAAVTTEERS 360 YGDSGGFESY EHILFPSPDR GIEHLLSREK FMENKFHTG*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEREIQNDAY NGRVMTEEQM EILRKQIAVY AVICDQLVLL HNSLSSYHPF SSGIRPMVGG  60
YFDQMGSSSS SHRISSRHRW TPTSTQLQIL ESIYEEGSGT PNRRRIREIA TELSEHGQIT  120
ETNVYNWFQN RRARSKRKQP QTTTTTANGQ ADDVAVTTEE RRSCGDSGGL ESYEHILFPS  180
PDLGIEHLKE RGESKFVKEE MEQGSLNGTY DGRVMTEEQM ETLRKQIAIY AIICDQLVLL  240
HNSLPSFPPL SSGMNMMGGG YFDPMVASSS AHGMSTRHRW TPTSKQLQIL ENIYKEGSGT  300
PNPRRIKEIA TELSEHGQIM EKNVYNWFQN RRARSKRKQP QTTTVTGPTD DAAVTTEERS  360
YGDSGGFESY EHILFPSPDR GIEHLLSREK FMENKFHTG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	338	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g025880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459763.1	1e-147	PREDICTED: putative WUSCHEL-related homeobox 10
Swissprot	Q9LM84	1e-128	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A178W4J5	1e-125	A0A178W4J5_ARATH; WOX14
STRING	XP_010459763.1	1e-146	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-120	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]