PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g026180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1051aa    MW: 115918 Da    PI: 8.3146
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g026180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.4e-41138215178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  Csa14g026180.1 138 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 215
                     6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-34133200IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077136213IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-37137214IPR004333Transcription factor, SBP-box
PfamPF031109.3E-29139212IPR004333Transcription factor, SBP-box
PROSITE profilePS512969.638628689IPR017941Rieske [2Fe-2S] iron-sulphur domain
Gene3DG3DSA:1.25.40.202.7E-7802947IPR020683Ankyrin repeat-containing domain
CDDcd002044.56E-10802945No hitNo description
SuperFamilySSF484033.55E-8806948IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.8886958IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 1051 aa     Download sequence    Send to blast
MDEVGAQVAT PMFIHPSLSP MGRKRDLYYP MSSRLVPSQQ QQPQRRDEWN SKMWDWDSRR  60
FEAKPVDAQT LSLGNVTTQQ FDLTSRNKSG GGEERGLDLN LGSGLTALEE TTTTTTAQNV  120
RPSKKVRSGS PGGGNYPMCQ VDNCTEDLSH AKDYHRRHKV CEVHSKATKA LVGKQMQRFC  180
QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTTQPEEIA SGVVVPGNRD NNTSNANMDL  240
MALLTALACA QGKNDVKPVS SPAVPDREQL LQILNKINAL PLPMDLVSKL NNIGSLARKN  300
LDQPMANPTN DMNGASPSTM DLLAVLSSTL GSSSPDALAI LSQGRFGNKD SDKTKLSSYD  360
HGVTTNVEKR TFGFSSGGGE RSSSSNQSPS QDSDSRAQDT RSSLSLQLFT SSPEDESRPT  420
VASSRKYYSS ASSNPVEDRS PSSSPVMQEL FPLQTSPETM RSNNHNNSSP SRTGCLPLEL  480
FGASNRGTAN PNFKGFGQQS GYASSGSDYS PPSLNSDAQD RTGKIVFKLL DKDPSQLPGT  540
LRSEIYNWLS NIPSEMESYI RPGCVVLSVY IAMSPAAWEQ LERNLLQRLG VLLQNPQSDF  600
WRNVRFIVNT GRQLASHKNG RVRCSKSWRT WNSPELLSVS PVAVVAGAET SLVVRGRSLT  660
NDGISIRCTH MGSYMSMEVT GAACRQAVCD ELNVNSFKVQ NAQPGFLGRC FIEVENGFRG  720
DSFPLIIANA SICKELNRLE EEFHPKSQDT SEEQAQSTDS RPTSREEVLC FLNELGWLFQ  780
KNQTSELREQ SDFSLARFKF LLVCSVERDY CALIRTLLDM LVERNLVNDE LNTEASDMLA  840
EIQLLNRAVK RKSTKMVELL IHYTVKSSAL DSSNNFVFLP NITGPGGITP LHLAACTSGS  900
DDMVDLLTND PQEIGLSSWN SLRDATGQTP YSYAAIRNNH SYNSLVARKL ADKRNKQVSL  960
NIENEIVDQK GLSKRLSSEM NKSSCASCAT VALKYQRRVS GSHRLFPTPI IHSMLAVATV  1020
CVCVCVFMHA FPIVRQGSHF SWGGLDYGSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32129212184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g026180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269070.0AK226907.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 14, clone: RAFL09-16-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459792.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLR0GUT00.0R0GUT0_9BRAS; Uncharacterized protein
STRINGXP_010459792.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]