PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g026950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 639aa    MW: 68925.4 Da    PI: 4.7526
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g026950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10240282246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++W+ +E +ll++av+++  + W  Ia ++g  ++  qc+++++ 
   Csa14g026950.1 240 DNWSDQETLLLLEAVELYNEN-WIQIADHVG-SKSKAQCILHFLR 282
                      58****************988.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129321.89237288IPR017884SANT domain
SMARTSM007171.3E-9238286IPR001005SANT/Myb domain
SuperFamilySSF466896.73E-12239290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-7240280IPR009057Homeodomain-like
PfamPF002494.2E-10241283IPR001005SANT/Myb domain
CDDcd001674.93E-8241283No hitNo description
PfamPF164954.3E-27423497IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MPASEDRRGK WKRRKRGGLS AARKPKQEEE DIEEEDEENN NNHNNEEIDD VDNNADELHQ  60
NGGATPDPGH GIGEVVEDSG SRISDFPSVV KRVVIRPHAS VTAVVAAERG GLIGETRGQG  120
SLPSLENISY GQLQALSTVP ADALSFDLER SDGASSAYVI SPPPILEGEG VAKRFGDLVH  180
VLPMHSDIRA LLTNCFISTL QGDIVLCSDC FHHGRFVVGH SCLDFVRVDP SKFYGDQDGD  240
NWSDQETLLL LEAVELYNEN WIQIADHVGS KSKAQCILHF LRLPVEDGLL DNVEVPGVTD  300
LENPANGYDH KGTDSDGDIP GYSEQDSDTE IKLPFVKSPN PVMALVAFLA SAVGPRVAAS  360
CAHESLAILS EDDRMKSEGV QGKEAGENQQ QDENSGAAKT SSQNGAEPQT PLPEDKVMVA  420
FRAGLSAAAT KAKLFADHEE REIQRLSANI VNHQLKRMEL KLKQFAEIET LLMKECEQVE  480
KTRQRFAAER VRMLSARFGS PGGIPPQTNN NLQGMSLSTG SNSINTLLQQ QQQQVSATSQ  540
PSIIPGFSNN PQVHAQMQFM ARQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ  600
LNNPAGSGGA ASINQPSFSH PMVRSSTGSG SGSGLGLN*
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g026950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910260.0AY091026.1 Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds.
GenBankAY1172450.0AY117245.1 Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462830.10.0PREDICTED: SWI/SNF complex subunit SWI3C-like
SwissprotQ9XI070.0SWI3C_ARATH; SWI/SNF complex subunit SWI3C
TrEMBLR0IIL60.0R0IIL6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010462830.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM646422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.22e-06MYB_related family protein
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]
  4. Archacki R, et al.
    Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes.
    Planta, 2009. 229(6): p. 1281-92
    [PMID:19301030]
  5. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  6. Liu ZW, et al.
    Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006026
    [PMID:27171427]