PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g027310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 1431aa MW: 163612 Da PI: 7.0645

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g027310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.6	6.2e-09	129	169	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k rr+++NReAAr+sR+RKka +++Lee +L++ ++ Csa14g027310.1 129 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 169 7899*************************977777665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-6	120	170	No hit	No description
SMART	SM00338	0.0024	122	184	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.347	128	170	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.18E-21	130	178	No hit	No description
Pfam	PF07716	1.1E-4	130	175	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-5	130	172	No hit	No description
PROSITE pattern	PS00036	0	133	148	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-28	217	291	IPR025422	Transcription factor TGA like domain
Pfam	PF14144	1.3E-19	401	455	IPR025422	Transcription factor TGA like domain
TIGRFAMs	TIGR01572	2.4E-49	513	689	IPR006462	Protein MS5
Pfam	PF04776	1.2E-12	646	691	IPR006462	Protein MS5
Pfam	PF14144	7.8E-18	706	759	IPR025422	Transcription factor TGA like domain
TIGRFAMs	TIGR01572	3.9E-49	817	993	IPR006462	Protein MS5
Pfam	PF04776	4.8E-13	950	998	IPR006462	Protein MS5
TIGRFAMs	TIGR01572	1.1E-34	994	1126	IPR006462	Protein MS5
Pfam	PF04776	5.7E-13	1082	1130	IPR006462	Protein MS5
TIGRFAMs	TIGR01572	3.1E-57	1184	1415	IPR006462	Protein MS5
Pfam	PF04776	8.9E-22	1305	1413	IPR006462	Protein MS5

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1431 aa Download sequence Send to blast
MEVGYRLDLY MYVLKAAELE TLFLQYNKLE SVIVDLQMLS SSSSSTQVET FRDMGMYEPF 60 QQLSGWENPF KSDVNNISNN QSSTTTLEVD ARPETDDNNR ANYASLYNNN SVEAEPSSNN 120 DQDEDRINDK MKRRLAQNRE AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV 180 RNSSDTSYLG PAGNINSGIA AFEMEYTHWL EEQNKRVSEI RTALQAHISD IELKMLVDTC 240 LNHYANLFRM KADAAKADVF FLMSGMWRTS TERFFQWIGG FRPSELLNVV MPYIEPLTDQ 300 QLLAVRNLQQ SSQQAEEALS QGLDKLQQSL VESIAVQIKV VESRNHGAQM ASAMENLQAL 360 ESFVNQADHL RQQTLQQMSK ILTTRQSARG LLALGEYFHR LHSCLDHYAN LFRIKADAAR 420 IDACYLVSGM WRTSTERFFQ WIGGFRPSEL LHVVMPYLQP LTNDQIREVA NLQLSSQYSE 480 DSLSQGINKL KMALAERIAT KEILEALQGF VNQGFDFPND NTRHRRLRRF EWGDNHPKFP 540 FGSVVKLYAK LGLHRYNLLE GTNLQLDSLK SFTVSITGGP SSYYVSLVAR VPDGGLQHFQ 600 VLVRERGLGF LDLGCPIARP LVTEPFLRPH SDPPPPPDGL FFSDELPDWP SEIAFNDRKR 660 FHLVKESELR DNDWVRLYLE LALVFHDRTL TEVFLDFGDY LILVCATVTN XYANLFRIKA 720 DAARIDACYL VSGMWRTSTE RFFQWIGGFR PSELLHVVMP YLQPLTNDQI REVANLQLSS 780 QYSEDSLSQG INKLKMALAE RIATKEILEA LQGFVNQGFD FPNDNTRHRR LRRFEWGDNH 840 PKFPFGSVVK LYAKLGLHRY NLLEGTNLQL DSLKSFTVSI TGGPSSYYVS LVARVPDGGL 900 QHFQVLVRER GLGFLDLGCP IARPLVTEPF LRPHSDPPPP PDGLFFSDEL PDWPSEIAFN 960 DRKRFHLVKE SELRDNDWVR LYLELALVFH DRTLTEGTNL QLDSLKSFTV SITGGPSSYY 1020 VSLVARVPDG GLQHFQVLVR ERGLGFLDLG CPIARPLVTE PFLRPHSDPP PPPDGLFFSD 1080 ELPDWPSEIA FNDRKRFHLV KESELRDNDW VRLYLELALV FHDRTLTEVR FSLSLSLSLS 1140 LSLISLSLPV GEKALDNKQR SKRLKRRLGV LRLWRLSNPR CHQGFDFPNG NTNTHFECGG 1200 KYPSYPFRSL VKLYARLGLH RYNLLELSLQ SFNMRVTGGP SSYYLSLVAR VPDSRLQQAF 1260 QVLVQERSFG FLDLGCPIAR PLVTTKEPHS DPTPPPDGLF SSKKLPRWPS SFTDTNRFHL 1320 LQDNDWIRLY LELALVFLDR SLTDDHHTHH LSQLEIVQVA IETTQDVGPR NSKKTTVVYI 1380 TYNDLAKAQA GEPVQGRAIV RRIINETTGN FRLRGVYWIK DDTKKDSVHL *

Sequence ? help Back to Top

Protein Sequence Length: 1431 aa Download sequence Send to blast

MEVGYRLDLY MYVLKAAELE TLFLQYNKLE SVIVDLQMLS SSSSSTQVET FRDMGMYEPF  60
QQLSGWENPF KSDVNNISNN QSSTTTLEVD ARPETDDNNR ANYASLYNNN SVEAEPSSNN  120
DQDEDRINDK MKRRLAQNRE AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV  180
RNSSDTSYLG PAGNINSGIA AFEMEYTHWL EEQNKRVSEI RTALQAHISD IELKMLVDTC  240
LNHYANLFRM KADAAKADVF FLMSGMWRTS TERFFQWIGG FRPSELLNVV MPYIEPLTDQ  300
QLLAVRNLQQ SSQQAEEALS QGLDKLQQSL VESIAVQIKV VESRNHGAQM ASAMENLQAL  360
ESFVNQADHL RQQTLQQMSK ILTTRQSARG LLALGEYFHR LHSCLDHYAN LFRIKADAAR  420
IDACYLVSGM WRTSTERFFQ WIGGFRPSEL LHVVMPYLQP LTNDQIREVA NLQLSSQYSE  480
DSLSQGINKL KMALAERIAT KEILEALQGF VNQGFDFPND NTRHRRLRRF EWGDNHPKFP  540
FGSVVKLYAK LGLHRYNLLE GTNLQLDSLK SFTVSITGGP SSYYVSLVAR VPDGGLQHFQ  600
VLVRERGLGF LDLGCPIARP LVTEPFLRPH SDPPPPPDGL FFSDELPDWP SEIAFNDRKR  660
FHLVKESELR DNDWVRLYLE LALVFHDRTL TEVFLDFGDY LILVCATVTN XYANLFRIKA  720
DAARIDACYL VSGMWRTSTE RFFQWIGGFR PSELLHVVMP YLQPLTNDQI REVANLQLSS  780
QYSEDSLSQG INKLKMALAE RIATKEILEA LQGFVNQGFD FPNDNTRHRR LRRFEWGDNH  840
PKFPFGSVVK LYAKLGLHRY NLLEGTNLQL DSLKSFTVSI TGGPSSYYVS LVARVPDGGL  900
QHFQVLVRER GLGFLDLGCP IARPLVTEPF LRPHSDPPPP PDGLFFSDEL PDWPSEIAFN  960
DRKRFHLVKE SELRDNDWVR LYLELALVFH DRTLTEGTNL QLDSLKSFTV SITGGPSSYY  1020
VSLVARVPDG GLQHFQVLVR ERGLGFLDLG CPIARPLVTE PFLRPHSDPP PPPDGLFFSD  1080
ELPDWPSEIA FNDRKRFHLV KESELRDNDW VRLYLELALV FHDRTLTEVR FSLSLSLSLS  1140
LSLISLSLPV GEKALDNKQR SKRLKRRLGV LRLWRLSNPR CHQGFDFPNG NTNTHFECGG  1200
KYPSYPFRSL VKLYARLGLH RYNLLELSLQ SFNMRVTGGP SSYYLSLVAR VPDSRLQQAF  1260
QVLVQERSFG FLDLGCPIAR PLVTTKEPHS DPTPPPDGLF SSKKLPRWPS SFTDTNRFHL  1320
LQDNDWIRLY LELALVFLDR SLTDDHHTHH LSQLEIVQVA IETTQDVGPR NSKKTTVVYI  1380
TYNDLAKAQA GEPVQGRAIV RRIINETTGN FRLRGVYWIK DDTKKDSVHL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g027310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATHTAGIA	0.0	L10209.1 Arabidopsis thaliana transcription factor mRNA, complete cds.
GenBank	BT026034	0.0	BT026034.1 Arabidopsis thaliana At1g22070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019091031.1	0.0	PREDICTED: UPF0725 protein At1g02770-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	0.0	TGA1A-related gene 3