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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa14g027310.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | bZIP | ||||||||
| Protein Properties | Length: 1342aa MW: 153157 Da PI: 6.7381 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 27.7 | 5.7e-09 | 119 | 159 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
+k rr+++NReAAr+sR+RKka +++Lee +L++ ++
Csa14g027310.2 119 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 159
7899*************************977777665554 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.20.5.170 | 9.6E-7 | 110 | 160 | No hit | No description |
| SMART | SM00338 | 0.0024 | 112 | 174 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 9.347 | 118 | 160 | IPR004827 | Basic-leucine zipper domain |
| CDD | cd14708 | 3.35E-21 | 120 | 168 | No hit | No description |
| SuperFamily | SSF57959 | 2.04E-5 | 120 | 162 | No hit | No description |
| Pfam | PF07716 | 1.1E-4 | 120 | 165 | IPR004827 | Basic-leucine zipper domain |
| PROSITE pattern | PS00036 | 0 | 123 | 138 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF14144 | 1.7E-28 | 207 | 281 | IPR025422 | Transcription factor TGA like domain |
| Pfam | PF14144 | 1.2E-19 | 391 | 445 | IPR025422 | Transcription factor TGA like domain |
| TIGRFAMs | TIGR01572 | 2.2E-49 | 503 | 679 | IPR006462 | Protein MS5 |
| Pfam | PF04776 | 1.1E-12 | 636 | 681 | IPR006462 | Protein MS5 |
| Pfam | PF14144 | 7.2E-18 | 696 | 749 | IPR025422 | Transcription factor TGA like domain |
| TIGRFAMs | TIGR01572 | 3.6E-49 | 807 | 983 | IPR006462 | Protein MS5 |
| Pfam | PF04776 | 4.4E-13 | 940 | 988 | IPR006462 | Protein MS5 |
| TIGRFAMs | TIGR01572 | 3.4E-34 | 984 | 1115 | IPR006462 | Protein MS5 |
| Pfam | PF04776 | 1.7E-12 | 1072 | 1115 | IPR006462 | Protein MS5 |
| Pfam | PF04776 | 1.0E-12 | 1257 | 1324 | IPR006462 | Protein MS5 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1342 aa Download sequence Send to blast |
MYVLKAAELE TLFLQYNKLE SVIVDLQMLS SSSSSTQVET FRDMGMYEPF QQLSGWENPF 60 KSDVNNISNN QSSTTTLEVD ARPETDDNNR ANYASLYNNN SVEAEPSSNN DQDEDRINDK 120 MKRRLAQNRE AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV RNSSDTSYLG 180 PAGNINSGIA AFEMEYTHWL EEQNKRVSEI RTALQAHISD IELKMLVDTC LNHYANLFRM 240 KADAAKADVF FLMSGMWRTS TERFFQWIGG FRPSELLNVV MPYIEPLTDQ QLLAVRNLQQ 300 SSQQAEEALS QGLDKLQQSL VESIAVQIKV VESRNHGAQM ASAMENLQAL ESFVNQADHL 360 RQQTLQQMSK ILTTRQSARG LLALGEYFHR LHSCLDHYAN LFRIKADAAR IDACYLVSGM 420 WRTSTERFFQ WIGGFRPSEL LHVVMPYLQP LTNDQIREVA NLQLSSQYSE DSLSQGINKL 480 KMALAERIAT KEILEALQGF VNQGFDFPND NTRHRRLRRF EWGDNHPKFP FGSVVKLYAK 540 LGLHRYNLLE GTNLQLDSLK SFTVSITGGP SSYYVSLVAR VPDGGLQHFQ VLVRERGLGF 600 LDLGCPIARP LVTEPFLRPH SDPPPPPDGL FFSDELPDWP SEIAFNDRKR FHLVKESELR 660 DNDWVRLYLE LALVFHDRTL TEVFLDFGDY LILVCATVTN XYANLFRIKA DAARIDACYL 720 VSGMWRTSTE RFFQWIGGFR PSELLHVVMP YLQPLTNDQI REVANLQLSS QYSEDSLSQG 780 INKLKMALAE RIATKEILEA LQGFVNQGFD FPNDNTRHRR LRRFEWGDNH PKFPFGSVVK 840 LYAKLGLHRY NLLEGTNLQL DSLKSFTVSI TGGPSSYYVS LVARVPDGGL QHFQVLVRER 900 GLGFLDLGCP IARPLVTEPF LRPHSDPPPP PDGLFFSDEL PDWPSEIAFN DRKRFHLVKE 960 SELRDNDWVR LYLELALVFH DRTLTEGTNL QLDSLKSFTV SITGGPSSYY VSLVARVPDG 1020 GLQHFQVLVR ERGLGFLDLG CPIARPLVTE PFLRPHSDPP PPPDGLFFSD ELPDWPSEIA 1080 FNDRKRFHLV KESELRDNDW VRLYLELALV FHDRTLTEGF DFPNGNTNTH FECGGKYPSY 1140 PFRSLVKLYA RLGLHRYNLL ELSLQSFNMR VTGGPSSYYL SLVARVPDSR LQQAFQVLVQ 1200 ERSFGFLDLG CPIARPLVTT KEPHSDPTPP PDGLFSSKKL PRWPSSFTDT NRFHLDHHTH 1260 HLSQLEIVQV AIETTQDVGP RNSKKTTVVY ITYNDLAKAQ AGEPVQGRAI VRRIINETTG 1320 NFRLRGVYWI KDDTKKDSVH L* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa14g027310.2 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | ATHTAGIA | 0.0 | L10209.1 Arabidopsis thaliana transcription factor mRNA, complete cds. | |||
| GenBank | BT026034 | 0.0 | BT026034.1 Arabidopsis thaliana At1g22070 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019091031.1 | 0.0 | PREDICTED: UPF0725 protein At1g02770-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22070.1 | 0.0 | TGA1A-related gene 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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