PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g027400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 437aa    MW: 47479 Da    PI: 8.7745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g027400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07109128626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+f+ + G C++G++C+F H+
  Csa14g027400.1 109 CKFWIA-GNCRRGEQCQFLHS 128
                     666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-6103129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131103130IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6105128IPR000571Zinc finger, CCCH-type
SMARTSM003200.0067135174IPR001680WD40 repeat
SuperFamilySSF509781.01E-45135433IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.0E-14137246IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008212.681142183IPR001680WD40 repeat
PROSITE profilePS5029424.389142436IPR017986WD40-repeat-containing domain
PfamPF117152.6E-6157207No hitNo description
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
PRINTSPR003202.4E-7161175IPR020472G-protein beta WD-40 repeat
SMARTSM00320140217254IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.1E-32247434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.0E-6264302IPR001680WD40 repeat
PfamPF004002.1E-6266302IPR001680WD40 repeat
PROSITE profilePS5008212.046271311IPR001680WD40 repeat
PRINTSPR003202.4E-7289303IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780289303IPR019775WD40 repeat, conserved site
SMARTSM003206.7E-5305342IPR001680WD40 repeat
PfamPF004000.0017307341IPR001680WD40 repeat
PRINTSPR003202.4E-7329343IPR020472G-protein beta WD-40 repeat
SMARTSM00320110348389IPR001680WD40 repeat
SMARTSM003202.9392429IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEVPRRYSHS RNFGGVNRQP QAFAADVISR RPYYAPYDNT MKKQGPNKLS RNLVWTSKQY  60
KAPEGNTPIK NDQANGSTKP KPPVLGRGCS VSVSSRKIAI SDTKKSVCCK FWIAGNCRRG  120
EQCQFLHSWS CGFPGLAMVA SREGHKNDIK GIALPQGSDK LFSVSSDDTL RIWDCHTGQC  180
VHTINLQAEA KAVSLISEGS WVFLGLQNAV KAFNVQTSKD LHLDGVVGGQ VHAMTVANGM  240
LFAGTSSGTI SVWKATTDSD VSDPFKYLTS LEGHHSGVVT CFFVGGQLLY SGSVDKTIKV  300
WDLNTLQCVM TLKQHTDTVT SLLCWEKCLI SSSLDGTIKV WACSENGSLE VTHTRRQEQS  360
VHALCGVHDA EAKPIIFCSY QNGTVGIYDL PSFEERGKMF STHTISTLTI GPGGLLFSGD  420
KTGNLRVWSL AAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-181434336322Tako8
6g6n_A6e-181434336322Tako8
6g6n_B6e-181434336322Tako8
6g6n_C6e-181434336322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g027400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459958.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010459958.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein