PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g031630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29531 Da    PI: 5.2527
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g031630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1869123256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Csa14g031630.1  69 KKKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSK 123
                     567799***********************************************99 PP
2HD-ZIP_I/II1222.9e-3969161193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++++l++ene L++++++L++++++
  Csa14g031630.1  69 KKKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKRQFESLRDENEVLQSQNQKLQAQVMA 161
                     59**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1952127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-1957125IPR009057Homeodomain-like
PROSITE profilePS5007117.4165125IPR001356Homeobox domain
SMARTSM003891.2E-1868129IPR001356Homeobox domain
PfamPF000461.3E-1569123IPR001356Homeobox domain
CDDcd000863.73E-1569126No hitNo description
PRINTSPR000314.8E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000314.8E-6105121IPR000047Helix-turn-helix motif
PfamPF021831.5E-14125165IPR003106Leucine zipper, homeobox-associated
SMARTSM003400.0041125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNNSLAFF PANFSLQNHQ QQEEDHPQLL QDFNGFLGKR SPMNNVQGFC NLEMNGEEEY  60
SDDGSKMGKK KRRLNMEQLK TLEKNFEIGN KLESDRKIEL ARALGLQPRQ IAIWFQNRRA  120
RSKTKQLEKD YDILKRQFES LRDENEVLQS QNQKLQAQVM ALKSREPIES INLNKETEGS  180
CSDRSENISG DIRPPEIDSQ FALGHPPTAT TMQFFQNLSS EQRMVKEENS ISNMFCGIDD  240
QSGFWPWLEQ QHYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872KKKRR
26873KKKRRL
3117125RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g031630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280560.0AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBankAY0849130.0AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBankBT0097270.0BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460239.10.0PREDICTED: homeobox-leucine zipper protein ATHB-23-like
SwissprotQ8LFD31e-177ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLR0I4581e-180R0I458_9BRAS; Uncharacterized protein
STRINGXP_010460239.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-179homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]